Sequence Similarity Clusters for the Entities in PDB 1E12

Entity #1 | Chains: A
HALORHODOPSIN protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57758
95 % 2 6 11938 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 2 6 11779
70 % 2 6 11148
50 % 2 6 9985
40 % 2 6 9079
30 % 58 194 173

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.