Sequence Similarity Clusters for the Entities in PDB 1E0F

Entity #1 | Chains: A,B,C
THROMBIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 323 334 53
95 % 330 342 63 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 330 342 67
70 % 330 342 81
50 % 330 342 112
40 % 330 342 135
30 % 330 342 146
Entity #2 | Chains: D,E,F
THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 11878
95 % 366 378 53 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 371 385 56
70 % 391 409 47
50 % 391 409 85
40 % 1815 1885 4
30 % 1826 1899 7
Entity #3 | Chains: I,J,K
HAEMADIN protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29090
95 % 1 1 25412 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 2.9
PDBFlex
90 % 1 1 24530
70 % 1 1 22253
50 % 1 1 19105
40 % 1 1 16870
30 % 1 1 14145

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures