Sequence Similarity Clusters for the Entities in PDB 1E0F

Entity #1 | Chains: A,B,C
THROMBIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 327 338 45
95 % 328 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 328 339 67
70 % 329 341 78
50 % 329 341 109
40 % 329 341 132
30 % 329 341 140
Entity #2 | Chains: D,E,F
THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 10816
95 % 365 377 52 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 370 384 48
70 % 390 408 46
50 % 390 408 84
40 % 1797 1864 4
30 % 1813 1886 6
Entity #3 | Chains: I,J,K
HAEMADIN protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31108
95 % 1 1 25741 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 2.9
PDBFlex
90 % 1 1 24880
70 % 1 1 22592
50 % 1 1 19528
40 % 1 1 17370
30 % 1 1 14888

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures