Sequence Similarity Clusters for the Entities in PDB 1E0F

Entity #1 | Chains: A,B,C
THROMBIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 324 335 45
95 % 325 336 60 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 325 336 65
70 % 326 338 77
50 % 326 338 102
40 % 326 338 125
30 % 326 338 137
Entity #2 | Chains: D,E,F
THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 10282
95 % 362 374 35 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 367 381 38
70 % 387 405 45
50 % 387 405 80
40 % 1630 1685 4
30 % 1766 1834 6
Entity #3 | Chains: I,J,K
HAEMADIN protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 29815
95 % 1 1 24725 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 2.9
PDBFlex
90 % 1 1 23924
70 % 1 1 21782
50 % 1 1 18865
40 % 1 1 16796
30 % 1 1 14402

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.