Sequence Similarity Clusters for the Entities in PDB 1E0F

Entity #1 | Chains: A,B,C
THROMBIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 322 333 44
95 % 323 334 60 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 323 334 64
70 % 324 336 77
50 % 324 336 100
40 % 324 336 123
30 % 324 336 134
Entity #2 | Chains: D,E,F
THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 9971
95 % 360 372 36 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 365 379 38
70 % 385 403 45
50 % 385 403 77
40 % 1614 1669 4
30 % 1745 1811 6
Entity #3 | Chains: I,J,K
HAEMADIN protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28871
95 % 1 1 23930 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 2.9
PDBFlex
90 % 1 1 23176
70 % 1 1 21205
50 % 1 1 18403
40 % 1 1 16388
30 % 1 1 14046

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.