Sequence Similarity Clusters for the Entities in PDB 1E08

Entity #1 | Chains: A
[FE]-HYDROGENASE (LARGE SUBUNIT) protein, length: 371 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 40944
95 % 2 2 34470
90 % 2 2 32956
70 % 2 2 29410
50 % 2 2 25119
40 % 2 2 22052
30 % 2 2 18396
Entity #2 | Chains: D
[FE]-HYDROGENASE (SMALL SUBUNIT) protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 36471
95 % 2 2 26804
90 % 2 2 25840
70 % 2 2 23383
50 % 2 2 25120
40 % 2 2 22053
30 % 2 2 18397
Entity #3 | Chains: E
CYTOCHROME C553 protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28481
95 % 1 4 20077
90 % 1 4 19509
70 % 2 5 14084
50 % 2 5 12450
40 % 2 5 11177
30 % 26 36 846

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures