Sequence Similarity Clusters for the Entities in PDB 1DZI

Entity #1 | Chains: A
INTEGRIN protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63181
95 % 2 6 3601 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.8
PDBFlex
90 % 2 6 3652
70 % 2 6 3599
50 % 7 15 1862
40 % 7 15 1868
30 % 32 58 481
Entity #2 | Chains: B,C,D
COLLAGEN protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 7676
95 % 2 3 8232
90 % 2 4 6276
70 % 38 60 148
50 % 39 64 174
40 % 39 64 189
30 % 39 64 202

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures