Sequence Similarity Clusters for the Entities in PDB 1DZI

Entity #1 | Chains: A
INTEGRIN protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61856
95 % 2 6 3514 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.8
PDBFlex
90 % 2 6 3564
70 % 2 6 3524
50 % 7 15 1811
40 % 7 15 1818
30 % 32 58 469
Entity #2 | Chains: B,C,D
COLLAGEN protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 7477
95 % 2 3 8048
90 % 2 4 6126
70 % 38 60 142
50 % 39 64 166
40 % 39 64 181
30 % 39 64 199

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.