Sequence Similarity Clusters for the Entities in PDB 1DZI

Entity #1 | Chains: A
INTEGRIN protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63616
95 % 2 6 3642 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.8
PDBFlex
90 % 2 6 3695
70 % 2 6 3646
50 % 7 15 1881
40 % 7 15 1889
30 % 32 58 483
Entity #2 | Chains: B,C,D
COLLAGEN protein, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 7732
95 % 2 3 8287
90 % 2 4 6318
70 % 38 60 153
50 % 39 64 176
40 % 39 64 191
30 % 39 64 204

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures