Sequence Similarity Clusters for the Entities in PDB 1DZE

Entity #1 | Chains: A
BACTERIORHODOPSIN (M INTERMEDIATE) protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 51 63 534
95 % 101 120 266 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 102 121 274
70 % 102 121 316
50 % 115 136 278
40 % 115 136 308
30 % 166 194 193

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures