Sequence Similarity Clusters for the Entities in PDB 1DZB

Entity #1 | Chains: A,B
SCFV FRAGMENT 1F9 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39740
95 % 1 1 30690 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 29596
70 % 8 18 1869
50 % 1463 5011 1
40 % 1463 5011 1
30 % 1668 5941 1
Entity #2 | Chains: X,Y
TURKEY EGG-WHITE LYSOZYME C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 12 4286
95 % 9 13 4662 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 608 738 5
70 % 815 961 7
50 % 820 969 8
40 % 841 1003 11
30 % 841 1003 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures