Sequence Similarity Clusters for the Entities in PDB 1DZB

Entity #1 | Chains: A,B
SCFV FRAGMENT 1F9 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39262
95 % 1 1 30330 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 29259
70 % 8 18 1831
50 % 1426 4913 1
40 % 1426 4913 1
30 % 1593 5780 1
Entity #2 | Chains: X,Y
TURKEY EGG-WHITE LYSOZYME C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 12 4218
95 % 9 13 4598 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 607 736 5
70 % 812 956 7
50 % 817 964 8
40 % 838 998 11
30 % 838 998 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures