Sequence Similarity Clusters for the Entities in PDB 1DZB

Entity #1 | Chains: A,B
SCFV FRAGMENT 1F9 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37026
95 % 1 1 28660 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 27679
70 % 7 17 1775
50 % 1295 4489 1
40 % 1295 4489 1
30 % 1444 5290 1
Entity #2 | Chains: X,Y
TURKEY EGG-WHITE LYSOZYME C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 12 3892
95 % 9 13 4292 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 584 710 5
70 % 786 927 7
50 % 791 935 7
40 % 812 969 11
30 % 812 969 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.