Sequence Similarity Clusters for the Entities in PDB 1DZB

Entity #1 | Chains: A,B
SCFV FRAGMENT 1F9 protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37888
95 % 1 1 32159 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 30796
70 % 21 52 415
50 % 1500 5180 1
40 % 1757 5834 1
30 % 2149 7269 1
Entity #2 | Chains: X,Y
TURKEY EGG-WHITE LYSOZYME C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 13 4206
95 % 9 13 4540 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 621 751 5
70 % 828 974 7
50 % 833 982 8
40 % 855 1017 10
30 % 855 1017 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures