Sequence Similarity Clusters for the Entities in PDB 1DYK

Entity #1 | Chains: A
LAMININ ALPHA 2 CHAIN protein, length: 394 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 10751
95 % 5 6 10425 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 5 6 10280
70 % 5 6 8525
50 % 5 6 8244
40 % 6 7 6135
30 % 6 7 5368

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5IK4 1 A Laminin subunit alpha-2 UNP residues 2730-3118 10090
2 5IK5 1 A Laminin subunit alpha-2 UNP residues 2730-3118 10090
3 5IK8 1 A, B Laminin subunit alpha-2 10090
4 5IK7 1 A, B Laminin subunit alpha-2 10090
5 1DYK 1 A LAMININ ALPHA 2 CHAIN LAMININ G-LIKE DOMAIN 4-5 PAIR 10090
6 1OKQ 1 A LAMININ ALPHA 2 CHAIN LAMININ G-LIKE DOMAIN 4-5 PAIR, RESIDUES 2729-3093 10090