Sequence Similarity Clusters for the Entities in PDB 1DXU

Entity #1 | Chains: A,C
HEMOGLOBIN (DEOXY) (ALPHA CHAIN) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 209 26
95 % 25 240 34 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 26 241 35
70 % 32 322 17
50 % 78 734 5
40 % 79 739 8
30 % 251 1182 8
Entity #2 | Chains: B,D
HEMOGLOBIN (DEOXY) (BETA CHAIN) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 159 53
95 % 24 240 33 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 24 245 32
70 % 31 336 13
50 % 79 734 5
40 % 80 739 8
30 % 252 1182 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.