Sequence Similarity Clusters for the Entities in PDB 1DXR

Entity #1 | Chains: C
PHOTOSYNTHETIC REACTION CENTER CYTOCHROME C SUBUNIT protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 27 2072
95 % 6 28 2284 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 6 28 2340
70 % 6 28 2344
50 % 6 28 2327
40 % 6 30 1944
30 % 6 30 1860
Entity #2 | Chains: H
PHOTOSYNTHETIC REACTION CENTER H SUBUNIT protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 28 1941
95 % 6 28 2243 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 6 28 2296
70 % 6 28 2307
50 % 7 34 1673
40 % 11 131 434
30 % 11 131 432
Entity #3 | Chains: L
PHOTOSYNTHETIC REACTION CENTER L SUBUNIT protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 28 1908
95 % 6 28 2212 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 6 28 2267
70 % 6 28 2283
50 % 11 131 407
40 % 11 131 433
30 % 11 131 430
Entity #4 | Chains: M
PHOTOSYNTHETIC REACTION CENTER M SUBUNIT protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 27 2023
95 % 6 28 2219 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 6 28 2273
70 % 6 28 2287
50 % 11 131 408
40 % 11 131 432
30 % 11 131 429

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures