Sequence Similarity Clusters for the Entities in PDB 1DXR

Entity #1 | Chains: C
PHOTOSYNTHETIC REACTION CENTER CYTOCHROME C SUBUNIT protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 26 1666
95 % 6 27 2144 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 6 27 2196
70 % 6 27 2192
50 % 6 27 2172
40 % 6 29 1857
30 % 6 29 1794
Entity #2 | Chains: H
PHOTOSYNTHETIC REACTION CENTER H SUBUNIT protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 25 1757
95 % 6 27 2159 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 6 27 2213
70 % 6 27 2203
50 % 6 27 2190
40 % 10 129 377
30 % 10 129 377
Entity #3 | Chains: L
PHOTOSYNTHETIC REACTION CENTER L SUBUNIT protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56796
95 % 6 27 2157 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 6 27 2210
70 % 6 27 2201
50 % 10 129 349
40 % 10 129 376
30 % 10 129 376
Entity #4 | Chains: M
PHOTOSYNTHETIC REACTION CENTER M SUBUNIT protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 25 1746
95 % 6 27 2146 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 6 27 2198
70 % 6 27 2194
50 % 10 129 348
40 % 10 129 375
30 % 10 129 375

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.