Sequence Similarity Clusters for the Entities in PDB 1DXR

Entity #1 | Chains: C
PHOTOSYNTHETIC REACTION CENTER CYTOCHROME C SUBUNIT protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 27 2186
95 % 6 28 2401 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 6 28 2463
70 % 6 28 2459
50 % 6 28 2427
40 % 6 30 2033
30 % 6 30 1939
Entity #2 | Chains: H
PHOTOSYNTHETIC REACTION CENTER H SUBUNIT protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 28 2057
95 % 6 28 2361 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 6 28 2419
70 % 6 28 2415
50 % 7 34 1741
40 % 11 131 459
30 % 11 131 460
Entity #3 | Chains: L
PHOTOSYNTHETIC REACTION CENTER L SUBUNIT protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 28 2100
95 % 6 28 2410 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 6 28 2472
70 % 6 28 2466
50 % 11 131 431
40 % 11 131 458
30 % 11 131 458
Entity #4 | Chains: M
PHOTOSYNTHETIC REACTION CENTER M SUBUNIT protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 27 2147
95 % 6 28 2336 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 6 28 2395
70 % 6 28 2395
50 % 11 131 432
40 % 11 131 457
30 % 11 131 457

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures