Sequence Similarity Clusters for the Entities in PDB 1DXR

Entity #1 | Chains: C
PHOTOSYNTHETIC REACTION CENTER CYTOCHROME C SUBUNIT protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 26 1714
95 % 6 27 2197 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 6 27 2250
70 % 6 27 2248
50 % 6 27 2231
40 % 6 29 1908
30 % 6 29 1837
Entity #2 | Chains: H
PHOTOSYNTHETIC REACTION CENTER H SUBUNIT protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 25 1807
95 % 6 27 2212 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 6 27 2266
70 % 6 27 2258
50 % 6 27 2247
40 % 10 129 403
30 % 10 129 405
Entity #3 | Chains: L
PHOTOSYNTHETIC REACTION CENTER L SUBUNIT protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57984
95 % 6 27 2210 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 6 27 2263
70 % 6 27 2255
50 % 10 129 379
40 % 10 129 402
30 % 10 129 404
Entity #4 | Chains: M
PHOTOSYNTHETIC REACTION CENTER M SUBUNIT protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 25 1793
95 % 6 27 2200
90 % 6 27 2253
70 % 6 27 2250
50 % 10 129 378
40 % 10 129 401
30 % 10 129 403

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures