Sequence Similarity Clusters for the Entities in PDB 1DXR

Entity #1 | Chains: C
PHOTOSYNTHETIC REACTION CENTER CYTOCHROME C SUBUNIT protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 23 1876
95 % 6 24 2269
90 % 6 24 2327
70 % 6 24 2322
50 % 6 24 2299
40 % 6 24 2284
30 % 6 24 2179
Entity #2 | Chains: H
PHOTOSYNTHETIC REACTION CENTER H SUBUNIT protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 22 1996
95 % 6 24 2323
90 % 6 24 2378
70 % 6 24 2372
50 % 6 24 2337
40 % 10 123 365
30 % 10 123 366
Entity #3 | Chains: L
PHOTOSYNTHETIC REACTION CENTER L SUBUNIT protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53679
95 % 6 24 2313
90 % 6 24 2369
70 % 6 24 2363
50 % 10 123 335
40 % 10 123 364
30 % 10 123 365
Entity #4 | Chains: M
PHOTOSYNTHETIC REACTION CENTER M SUBUNIT protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 22 1978
95 % 6 24 2288
90 % 6 24 2344
70 % 6 24 2339
50 % 10 123 334
40 % 10 123 363
30 % 10 123 364

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.