Sequence Similarity Clusters for the Entities in PDB 1DXR

Entity #1 | Chains: C
PHOTOSYNTHETIC REACTION CENTER CYTOCHROME C SUBUNIT protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 27 1970
95 % 6 28 2145 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 6 28 2198
70 % 6 28 2206
50 % 6 28 2200
40 % 6 30 1895
30 % 6 30 1816
Entity #2 | Chains: H
PHOTOSYNTHETIC REACTION CENTER H SUBUNIT protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 28 1885
95 % 6 28 2188 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 6 28 2240
70 % 6 28 2250
50 % 7 34 1615
40 % 11 131 424
30 % 11 131 421
Entity #3 | Chains: L
PHOTOSYNTHETIC REACTION CENTER L SUBUNIT protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 28 1856
95 % 6 28 2158 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 6 28 2212
70 % 6 28 2224
50 % 11 131 398
40 % 11 131 422
30 % 11 131 418
Entity #4 | Chains: M
PHOTOSYNTHETIC REACTION CENTER M SUBUNIT protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 27 1969
95 % 6 28 2165 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 6 28 2218
70 % 6 28 2228
50 % 11 131 399
40 % 11 131 423
30 % 11 131 419

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures