Sequence Similarity Clusters for the Entities in PDB 1DX5

Entity #1 | Chains: A,B,C,D
THROMBIN LIGHT CHAIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 263 335 45
95 % 264 336 60 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 264 336 65
70 % 265 338 76
50 % 265 338 100
40 % 265 338 124
30 % 265 338 135
Entity #2 | Chains: E,F,G,H
THROMBIN INHIBITOR GLU-GLY-ARG-0QE protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: I,J,K,L
THROMBOMODULIN protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22981
95 % 1 2 10504 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.5
PDBFlex
90 % 1 2 10365
70 % 1 2 9820
50 % 1 2 8899
40 % 1 2 8153
30 % 1 2 7182
Entity #4 | Chains: M,N,O,P
THROMBIN HEAVY CHAIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 10133
95 % 293 374 35 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 296 381 38
70 % 305 405 43
50 % 305 405 78
40 % 1359 1682 4
30 % 1467 1831 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.