Sequence Similarity Clusters for the Entities in PDB 1DX5

Entity #1 | Chains: A,B,C,D
THROMBIN LIGHT CHAIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 265 338 45
95 % 266 339 62 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 266 339 66
70 % 267 341 78
50 % 267 341 107
40 % 267 341 130
30 % 267 341 137
Entity #2 | Chains: E,F,G,H
THROMBIN INHIBITOR GLU-GLY-ARG-0QE protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: I,J,K,L
THROMBOMODULIN protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23930
95 % 1 2 10899 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 2.0
PDBFlex
90 % 1 2 10748
70 % 1 2 10207
50 % 1 2 9243
40 % 1 2 8454
30 % 1 2 7448
Entity #4 | Chains: M,N,O,P
THROMBIN HEAVY CHAIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 10532
95 % 295 377 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 298 384 39
70 % 307 408 46
50 % 307 408 84
40 % 1388 1719 4
30 % 1496 1869 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures