Sequence Similarity Clusters for the Entities in PDB 1DX5

Entity #1 | Chains: A,B,C,D
THROMBIN LIGHT CHAIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 260 333 44
95 % 261 334 60 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 261 334 64
70 % 262 336 77
50 % 262 336 100
40 % 262 336 123
30 % 262 336 134
Entity #2 | Chains: E,F,G,H
THROMBIN INHIBITOR GLU-GLY-ARG-0QE protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: I,J,K,L
THROMBOMODULIN protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22652
95 % 1 2 10330 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.5
PDBFlex
90 % 1 2 10192
70 % 1 2 9661
50 % 1 2 8768
40 % 1 2 8032
30 % 1 2 7074
Entity #4 | Chains: M,N,O,P
THROMBIN HEAVY CHAIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 9971
95 % 290 372 36 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 293 379 38
70 % 302 403 45
50 % 302 403 77
40 % 1348 1669 4
30 % 1455 1811 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.