Sequence Similarity Clusters for the Entities in PDB 1DX5

Entity #1 | Chains: A,B,C,D
THROMBIN LIGHT CHAIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 265 338 45
95 % 266 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 266 339 67
70 % 267 341 78
50 % 267 341 109
40 % 267 341 132
30 % 267 341 140
Entity #2 | Chains: E,F,G,H
THROMBIN INHIBITOR GLU-GLY-ARG-0QE protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: I,J,K,L
THROMBOMODULIN protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24460
95 % 1 2 11157 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 2.0
PDBFlex
90 % 1 2 11005
70 % 1 2 10439
50 % 1 2 9444
40 % 1 2 8635
30 % 1 2 7599
Entity #4 | Chains: M,N,O,P
THROMBIN HEAVY CHAIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 10798
95 % 295 377 52 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 298 384 48
70 % 307 408 46
50 % 307 408 84
40 % 1497 1863 4
30 % 1507 1885 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures