Sequence Similarity Clusters for the Entities in PDB 1DWE

Entity #1 | Chains: L
ALPHA-THROMBIN light chain protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 311 338 45
95 % 312 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 312 339 67
70 % 313 341 78
50 % 313 341 109
40 % 313 341 132
30 % 313 341 140
Entity #2 | Chains: H
ALPHA-THROMBIN heavy chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 267 290 75
95 % 347 377 52 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 352 384 48
70 % 369 408 46
50 % 369 408 84
40 % 1699 1863 4
30 % 1712 1885 6
Entity #3 | Chains: I
HIRUDIN IIIA protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures