Sequence Similarity Clusters for the Entities in PDB 1DWE

Entity #1 | Chains: L
ALPHA-THROMBIN light chain protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 307 334 53
95 % 313 342 63 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 313 342 67
70 % 313 342 81
50 % 313 342 112
40 % 313 342 135
30 % 313 342 146
Entity #2 | Chains: H
ALPHA-THROMBIN heavy chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 306 332 52
95 % 347 378 53 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 352 385 56
70 % 369 409 47
50 % 369 409 85
40 % 1716 1885 4
30 % 1725 1899 7
Entity #3 | Chains: I
HIRUDIN IIIA protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures