Sequence Similarity Clusters for the Entities in PDB 1DVF

Entity #1 | Chains: A
FV D1.3 protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 13905
95 % 11 17 3803 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 11 21 3023
70 % 57 191 72
50 % 86 308 21
40 % 260 929 5
30 % 292 1056 7
Entity #2 | Chains: B
FV D1.3 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 5834
95 % 11 17 3799 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 11 17 3846
70 % 11 36 1250
50 % 167 576 7
40 % 261 929 5
30 % 293 1056 7
Entity #3 | Chains: C
FV E5.2 protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 68884
95 % 1 4 13215 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.1
PDBFlex
90 % 1 8 6479
70 % 58 191 72
50 % 87 308 21
40 % 262 929 5
30 % 294 1056 7
Entity #4 | Chains: D
FV E5.2 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67532
95 % 1 1 46472
90 % 1 1 44081
70 % 16 85 257
50 % 168 576 7
40 % 263 929 5
30 % 295 1056 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.