Sequence Similarity Clusters for the Entities in PDB 1DVF

Entity #1 | Chains: A
FV D1.3 protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 12 6476
95 % 11 17 4196 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 11 21 3334
70 % 61 223 72
50 % 88 339 19
40 % 96 383 27
30 % 1321 7653 1
Entity #2 | Chains: B
FV D1.3 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 15 4689
95 % 11 17 4234 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 11 17 4279
70 % 23 76 578
50 % 183 659 6
40 % 1086 6175 1
30 % 1322 7653 1
Entity #3 | Chains: C
FV E5.2 protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 21320
95 % 1 3 19333 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.3
PDBFlex
90 % 1 8 7000
70 % 62 223 72
50 % 89 339 19
40 % 97 383 27
30 % 1323 7653 1
Entity #4 | Chains: D
FV E5.2 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55989
95 % 1 1 46600
90 % 1 1 44244
70 % 16 91 273
50 % 184 659 6
40 % 1087 6175 1
30 % 1324 7653 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures