Sequence Similarity Clusters for the Entities in PDB 1DVF

Entity #1 | Chains: A
FV D1.3 protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 13461
95 % 11 17 3693 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 11 21 2930
70 % 57 187 74
50 % 85 301 22
40 % 248 882 5
30 % 279 1008 7
Entity #2 | Chains: B
FV D1.3 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 5638
95 % 11 17 3688
90 % 11 17 3731
70 % 11 36 1215
50 % 156 536 8
40 % 249 882 5
30 % 280 1008 7
Entity #3 | Chains: C
FV E5.2 protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66935
95 % 1 4 12799 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.1
PDBFlex
90 % 1 8 6272
70 % 58 187 74
50 % 86 301 22
40 % 250 882 5
30 % 281 1008 7
Entity #4 | Chains: D
FV E5.2 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65631
95 % 1 1 45116
90 % 1 1 42840
70 % 16 82 257
50 % 157 536 8
40 % 251 882 5
30 % 282 1008 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.