Sequence Similarity Clusters for the Entities in PDB 1DVF

Entity #1 | Chains: A
FV D1.3 protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 14452
95 % 11 17 3948 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 11 21 3139
70 % 57 193 75
50 % 86 312 23
40 % 265 956 5
30 % 297 1085 7
Entity #2 | Chains: B
FV D1.3 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 6061
95 % 11 17 3944 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 11 17 3999
70 % 23 76 538
50 % 172 599 6
40 % 266 956 5
30 % 298 1085 7
Entity #3 | Chains: C
FV E5.2 protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71064
95 % 1 4 13692 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.1
PDBFlex
90 % 1 8 6711
70 % 58 193 75
50 % 87 312 23
40 % 267 956 5
30 % 299 1085 7
Entity #4 | Chains: D
FV E5.2 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69690
95 % 1 1 47869
90 % 1 1 45342
70 % 16 86 268
50 % 173 599 6
40 % 268 956 5
30 % 300 1085 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures