Sequence Similarity Clusters for the Entities in PDB 1DVF

Entity #1 | Chains: A
FV D1.3 protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 12 6615
95 % 13 20 3631 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 13 24 2942
70 % 63 236 70
50 % 90 367 18
40 % 98 411 28
30 % 1345 7920 1
Entity #2 | Chains: B
FV D1.3 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 15 4785
95 % 11 17 4330 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 11 17 4368
70 % 23 78 585
50 % 188 712 6
40 % 1106 6368 1
30 % 1346 7920 1
Entity #3 | Chains: C
FV E5.2 protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 21733
95 % 1 3 19703 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.2
PDBFlex
90 % 1 8 7143
70 % 64 236 70
50 % 91 367 18
40 % 99 411 28
30 % 1347 7920 1
Entity #4 | Chains: D
FV E5.2 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57062
95 % 1 1 47450
90 % 1 1 45045
70 % 18 94 274
50 % 189 712 6
40 % 1107 6368 1
30 % 1348 7920 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures