Sequence Similarity Clusters for the Entities in PDB 1DVA

Entity #1 | Chains: H,I
DES-GLA FACTOR VIIA (HEAVY CHAIN) protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 97 97 306
95 % 101 101 394 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 0.7
PDBFlex
90 % 101 101 421
70 % 101 101 454
50 % 101 101 513
40 % 1667 1719 4
30 % 1806 1869 6
Entity #2 | Chains: L,M
DES-GLA FACTOR VIIA (LIGHT CHAIN) protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 14152
95 % 5 5 13421 Flexibility: Medium
Max RMSD: 11.7, Avg RMSD: 6.3
PDBFlex
90 % 5 5 13204
70 % 5 5 12420
50 % 5 5 11077
40 % 31 31 1498
30 % 31 31 1468
Entity #3 | Chains: X,Y
PEPTIDE E-76 protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures