Sequence Similarity Clusters for the Entities in PDB 1DVA

Entity #1 | Chains: H,I
DES-GLA FACTOR VIIA (HEAVY CHAIN) protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 97 97 264
95 % 101 101 356 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.7
PDBFlex
90 % 101 101 379
70 % 101 101 416
50 % 101 101 499
40 % 1631 1682 4
30 % 1769 1831 6
Entity #2 | Chains: L,M
DES-GLA FACTOR VIIA (LIGHT CHAIN) protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 13631
95 % 5 5 12951 Flexibility: Medium
Max RMSD: 11.7, Avg RMSD: 7.6
PDBFlex
90 % 5 5 12738
70 % 5 5 11956
50 % 5 5 10666
40 % 31 31 1455
30 % 31 31 1432
Entity #3 | Chains: X,Y
PEPTIDE E-76 protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.