Sequence Similarity Clusters for the Entities in PDB 1DVA

Entity #1 | Chains: H,I
DES-GLA FACTOR VIIA (HEAVY CHAIN) protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 97 97 322
95 % 101 101 415 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 0.7
PDBFlex
90 % 101 101 450
70 % 101 101 483
50 % 101 101 528
40 % 1804 1864 4
30 % 1820 1886 6
Entity #2 | Chains: L,M
DES-GLA FACTOR VIIA (LIGHT CHAIN) protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 14506
95 % 5 5 13733 Flexibility: Medium
Max RMSD: 11.7, Avg RMSD: 6.3
PDBFlex
90 % 5 5 13503
70 % 5 5 12677
50 % 5 5 11296
40 % 31 31 1525
30 % 31 31 1505
Entity #3 | Chains: X,Y
PEPTIDE E-76 protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures