Sequence Similarity Clusters for the Entities in PDB 1DVA

Entity #1 | Chains: H,I
DES-GLA FACTOR VIIA (HEAVY CHAIN) protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 97 97 270
95 % 101 101 361 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.7
PDBFlex
90 % 101 101 385
70 % 101 101 422
50 % 101 101 502
40 % 1635 1685 4
30 % 1773 1834 6
Entity #2 | Chains: L,M
DES-GLA FACTOR VIIA (LIGHT CHAIN) protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 13817
95 % 5 5 13135
90 % 5 5 12921
70 % 5 5 12167
50 % 5 5 10849
40 % 31 31 1469
30 % 31 31 1445
Entity #3 | Chains: X,Y
PEPTIDE E-76 protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.