Sequence Similarity Clusters for the Entities in PDB 1DVA

Entity #1 | Chains: H,I
DES-GLA FACTOR VIIA (HEAVY CHAIN) protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 97 97 349
95 % 101 101 419 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 101 101 456
70 % 101 101 488
50 % 101 101 538
40 % 1821 1884 4
30 % 1832 1898 7
Entity #2 | Chains: L,M
DES-GLA FACTOR VIIA (LIGHT CHAIN) protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 13646
95 % 5 5 12890 Flexibility: Medium
Max RMSD: 11.7, Avg RMSD: 7.6
PDBFlex
90 % 5 5 12672
70 % 5 5 11925
50 % 5 5 10646
40 % 31 31 1532
30 % 31 31 1520
Entity #3 | Chains: X,Y
PEPTIDE E-76 protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures