Sequence Similarity Clusters for the Entities in PDB 1DV6

Entity #1 | Chains: L,R
PHOTOSYNTHETIC REACTION CENTER protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 51 68 455
95 % 65 97 385 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 65 97 414
70 % 65 97 453
50 % 84 131 392
40 % 84 131 413
30 % 84 131 408
Entity #2 | Chains: M,S
PHOTOSYNTHETIC REACTION CENTER protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 62 512
95 % 65 97 384 Flexibility: Low
Max RMSD: 6.6, Avg RMSD: 0.9
PDBFlex
90 % 65 97 413
70 % 65 97 451
50 % 84 131 391
40 % 84 131 412
30 % 84 131 407
Entity #3 | Chains: H,T
PHOTOSYNTHETIC REACTION CENTER protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 96 288
95 % 65 97 386 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 65 97 415
70 % 65 97 454
50 % 65 97 513
40 % 84 131 414
30 % 84 131 409

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures