Sequence Similarity Clusters for the Entities in PDB 1DV6

Entity #1 | Chains: L,R
PHOTOSYNTHETIC REACTION CENTER protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 51 68 452
95 % 65 97 369 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 65 97 397
70 % 65 97 437
50 % 83 129 383
40 % 83 129 410
30 % 83 129 410
Entity #2 | Chains: M,S
PHOTOSYNTHETIC REACTION CENTER protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 45 62 505
95 % 65 97 368 Flexibility: Low
Max RMSD: 6.6, Avg RMSD: 0.9
PDBFlex
90 % 65 97 396
70 % 65 97 435
50 % 83 129 382
40 % 83 129 408
30 % 83 129 408
Entity #3 | Chains: H,T
PHOTOSYNTHETIC REACTION CENTER protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 96 272
95 % 65 97 370 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 65 97 398
70 % 65 97 438
50 % 65 97 509
40 % 83 129 411
30 % 83 129 411

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures