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An Information Portal to 109093 Biological Macromolecular Structures

PARTIAL STRUCTURE OF 16S RNA OF THE SMALL RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS
Sequence Clustering and Redundancy Reduction Results
1DV4
Sequence Clusters for the Sequence Entities in PDB 1DV4
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 362 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 17708
95% 3 4 15429
90% 3 4 15060
70% 4 5 10713
50% 287 288 37
40% 287 288 47
30% 289 290 69
Entity #3: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 209 210 16
95% 210 211 33
90% 210 211 36
70% 210 211 45
50% 253 254 52
40% 254 255 67
30% 254 255 88
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.