POP-OUT | CLOSE

An Information Portal to 110790 Biological Macromolecular Structures

PARTIAL STRUCTURE OF 16S RNA OF THE SMALL RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS
Sequence Clustering and Redundancy Reduction Results
1DV4
Sequence Clusters for the Sequence Entities in PDB 1DV4
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 362 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: E - RIBOSOMAL PROTEIN S5 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 18051
95% 3 4 15725
90% 3 4 15341
70% 4 5 10877
50% 303 304 36
40% 303 304 47
30% 305 306 65
Entity #3: Chains: G - RIBOSOMAL PROTEIN S7 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 223 224 26
95% 224 225 40
90% 224 225 44
70% 224 225 55
50% 267 268 51
40% 268 269 62
30% 268 269 81
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.