Sequence Similarity Clusters for the Entities in PDB 1DV4

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 362 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 22311
95 % 3 4 19257
90 % 3 4 18746
70 % 10 11 6182
50 % 416 417 30
40 % 416 417 42
30 % 418 419 60
Entity #3 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 274 275 28
95 % 275 276 41
90 % 275 276 46
70 % 275 276 56
50 % 355 356 66
40 % 360 361 84
30 % 360 361 96

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.