Sequence Similarity Clusters for the Entities in PDB 1DV4

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 362 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 22609
95 % 3 4 19496 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 4 18985
70 % 13 14 4412
50 % 422 423 30
40 % 422 423 43
30 % 424 425 61
Entity #3 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 274 275 28
95 % 275 276 42 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 275 276 46
70 % 275 276 57
50 % 362 363 66
40 % 367 368 82
30 % 367 368 96

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.