Sequence Similarity Clusters for the Entities in PDB 1DV4

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 362 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
RIBOSOMAL PROTEIN S5 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 23462
95 % 3 4 20903 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 3 4 20287
70 % 13 14 4642
50 % 458 459 31
40 % 458 459 44
30 % 460 461 60
Entity #3 | Chains: G
RIBOSOMAL PROTEIN S7 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 299 300 29
95 % 299 300 38 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 299 300 42
70 % 299 300 52
50 % 396 397 54
40 % 402 403 67
30 % 402 403 81

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures