Sequence Similarity Clusters for the Entities in PDB 1DV3

Entity #1 | Chains: L,R
PHOTOSYNTHETIC REACTION CENTER REACTION CENTER protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 68 404
95 % 49 97 334
90 % 49 97 360
70 % 49 97 398
50 % 65 126 328
40 % 65 126 352
30 % 65 126 359
Entity #2 | Chains: M,S
PHOTOSYNTHETIC REACTION CENTER REACTION CENTER protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 62 452
95 % 49 97 333
90 % 49 97 359
70 % 49 97 396
50 % 65 126 327
40 % 65 126 350
30 % 65 126 357
Entity #3 | Chains: H,T
PHOTOSYNTHETIC REACTION CENTER REACTION CENTER protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 96 240
95 % 49 97 335
90 % 49 97 361
70 % 49 97 399
50 % 49 97 467
40 % 65 126 353
30 % 65 126 360

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.