Sequence Similarity Clusters for the Entities in PDB 1DV3

Entity #1 | Chains: L,R
PHOTOSYNTHETIC REACTION CENTER REACTION CENTER protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 40 68 448
95 % 49 97 363 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 49 97 391
70 % 49 97 428
50 % 67 129 379
40 % 67 129 401
30 % 67 129 402
Entity #2 | Chains: M,S
PHOTOSYNTHETIC REACTION CENTER REACTION CENTER protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 62 501
95 % 49 97 362 Flexibility: Low
Max RMSD: 6.6, Avg RMSD: 0.9
PDBFlex
90 % 49 97 390
70 % 49 97 426
50 % 67 129 378
40 % 67 129 400
30 % 67 129 401
Entity #3 | Chains: H,T
PHOTOSYNTHETIC REACTION CENTER REACTION CENTER protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 49 96 269
95 % 49 97 364 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 49 97 392
70 % 49 97 429
50 % 49 97 501
40 % 67 129 402
30 % 67 129 403

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures