Sequence Similarity Clusters for the Entities in PDB 1DV3

Entity #1 | Chains: L,R
PHOTOSYNTHETIC REACTION CENTER REACTION CENTER protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 47 90 345
95 % 49 97 386 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 49 97 411
70 % 49 97 451
50 % 68 131 392
40 % 68 131 421
30 % 68 131 417
Entity #2 | Chains: M,S
PHOTOSYNTHETIC REACTION CENTER REACTION CENTER protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 56 653
95 % 49 97 389 Flexibility: Low
Max RMSD: 6.6, Avg RMSD: 0.9
PDBFlex
90 % 49 97 413
70 % 49 97 454
50 % 68 131 394
40 % 68 131 422
30 % 68 131 418
Entity #3 | Chains: H,T
PHOTOSYNTHETIC REACTION CENTER REACTION CENTER protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 49 96 310
95 % 49 97 394 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 49 97 420
70 % 49 97 457
50 % 49 97 515
40 % 68 131 423
30 % 68 131 420

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures