Sequence Similarity Clusters for the Entities in PDB 1DV3

Entity #1 | Chains: L,R
PHOTOSYNTHETIC REACTION CENTER REACTION CENTER protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 40 68 416
95 % 49 97 342 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 49 97 367
70 % 49 97 404
50 % 65 126 334
40 % 65 126 362
30 % 65 126 369
Entity #2 | Chains: M,S
PHOTOSYNTHETIC REACTION CENTER REACTION CENTER protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 62 463
95 % 49 97 341 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.8
PDBFlex
90 % 49 97 366
70 % 49 97 402
50 % 65 126 333
40 % 65 126 361
30 % 65 126 367
Entity #3 | Chains: H,T
PHOTOSYNTHETIC REACTION CENTER REACTION CENTER protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 49 96 248
95 % 49 97 343 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 49 97 368
70 % 49 97 405
50 % 49 97 474
40 % 65 126 363
30 % 65 126 370

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.