Sequence Similarity Clusters for the Entities in PDB 1DUZ

Entity #1 | Chains: A,D
HLA-A*0201 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 55 212 58
95 % 69 256 59 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 76 310 36
70 % 180 740 6
50 % 184 754 7
40 % 185 806 9
30 % 198 930 12
Entity #2 | Chains: B,E
BETA-2 MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 666 2
95 % 191 681 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 192 690 4
70 % 216 944 4
50 % 221 966 3
40 % 221 966 6
30 % 221 966 9
Entity #3 | Chains: C,F
HTLV-1 OCTAMERIC TAX PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures