Sequence Similarity Clusters for the Entities in PDB 1DUZ

Entity #1 | Chains: A,D
HLA-A*0201 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 52 199 53
95 % 67 249 58 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 74 297 36
70 % 170 705 6
50 % 170 710 6
40 % 175 761 10
30 % 186 881 15
Entity #2 | Chains: B,E
BETA-2 MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 163 607 2
95 % 183 651 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 184 660 4
70 % 205 898 4
50 % 210 920 3
40 % 210 920 8
30 % 210 920 12
Entity #3 | Chains: C,F
HTLV-1 OCTAMERIC TAX PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.