Sequence Similarity Clusters for the Entities in PDB 1DUY

Entity #1 | Chains: A,D
HLA-A2*0201 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 101 204 51
95 % 136 254 57 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 150 302 35
70 % 349 716 6
50 % 350 721 6
40 % 373 772 10
30 % 402 896 15
Entity #2 | Chains: B,E
BETA-2 MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 326 616 2
95 % 353 660 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 356 669 4
70 % 423 912 4
50 % 431 934 3
40 % 431 934 7
30 % 431 934 12
Entity #3 | Chains: C,F
HTLV-1 OCTAMERIC TAX PEPTIDE protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.