Sequence Similarity Clusters for the Entities in PDB 1DUY

Entity #1 | Chains: A,D
HLA-A2*0201 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 101 204 52
95 % 137 255 57 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 152 308 35
70 % 354 727 6
50 % 355 732 6
40 % 378 783 10
30 % 407 907 15
Entity #2 | Chains: B,E
BETA-2 MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 329 624 2
95 % 356 668 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 359 677 4
70 % 426 922 4
50 % 434 944 3
40 % 434 944 7
30 % 434 944 12
Entity #3 | Chains: C,F
HTLV-1 OCTAMERIC TAX PEPTIDE protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures