Sequence Similarity Clusters for the Entities in PDB 1DUY

Entity #1 | Chains: A,D
HLA-A2*0201 protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 106 212 58
95 % 137 256 59 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 152 310 36
70 % 361 740 6
50 % 367 754 7
40 % 386 806 9
30 % 415 930 12
Entity #2 | Chains: B,E
BETA-2 MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 352 666 2
95 % 361 681 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 364 690 4
70 % 434 944 4
50 % 442 966 3
40 % 442 966 6
30 % 442 966 9
Entity #3 | Chains: C,F
HTLV-1 OCTAMERIC TAX PEPTIDE protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures