Sequence Similarity Clusters for the Entities in PDB 1DU3

Entity #1 | Chains: A,B,C,G,H,I
DEATH RECEPTOR 5 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 2646
95 % 3 9 3041 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.2
PDBFlex
90 % 3 9 3088
70 % 3 9 3059
50 % 3 10 2659
40 % 3 10 2604
30 % 3 10 2460
Entity #2 | Chains: D,E,F,J,K,L
TNF-RELATED APOPTOSIS INDUCING LIGAND protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 2973
95 % 1 6 3685 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.4
PDBFlex
90 % 1 6 3736
70 % 1 6 3685
50 % 1 6 3577
40 % 1 6 3448
30 % 2 15 1724

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures