Sequence Similarity Clusters for the Entities in PDB 1DU3

Entity #1 | Chains: A,B,C,G,H,I
DEATH RECEPTOR 5 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 2477
95 % 3 9 2872 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 3 9 2917
70 % 3 9 2897
50 % 3 10 2511
40 % 3 10 2467
30 % 3 10 2345
Entity #2 | Chains: D,E,F,J,K,L
TNF-RELATED APOPTOSIS INDUCING LIGAND protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 2789
95 % 1 6 3485 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.3
PDBFlex
90 % 1 6 3535
70 % 1 6 3480
50 % 1 6 3399
40 % 1 6 3287
30 % 2 15 1632

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.