Sequence Similarity Clusters for the Entities in PDB 1DU3

Entity #1 | Chains: A,B,C,G,H,I
DEATH RECEPTOR 5 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 3253
95 % 3 9 3307 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.2
PDBFlex
90 % 3 9 3363
70 % 3 9 3305
50 % 3 10 2802
40 % 3 10 2736
30 % 3 10 2540
Entity #2 | Chains: D,E,F,J,K,L
TNF-RELATED APOPTOSIS INDUCING LIGAND protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 3609
95 % 1 6 3920 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.3
PDBFlex
90 % 1 6 3976
70 % 1 6 3886
50 % 1 6 3778
40 % 1 6 3599
30 % 16 62 282

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures