Sequence Similarity Clusters for the Entities in PDB 1DU3

Entity #1 | Chains: A,B,C,G,H,I
DEATH RECEPTOR 5 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 3182
95 % 3 9 3234 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.2
PDBFlex
90 % 3 9 3293
70 % 3 9 3241
50 % 3 10 2764
40 % 3 10 2694
30 % 3 10 2510
Entity #2 | Chains: D,E,F,J,K,L
TNF-RELATED APOPTOSIS INDUCING LIGAND protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 3530
95 % 1 6 3840 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.3
PDBFlex
90 % 1 6 3904
70 % 1 6 3825
50 % 1 6 3729
40 % 1 6 3560
30 % 16 61 279

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures