Sequence Similarity Clusters for the Entities in PDB 1DU3

Entity #1 | Chains: A,B,C,G,H,I
DEATH RECEPTOR 5 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 3359
95 % 3 9 3408 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.2
PDBFlex
90 % 3 9 3468
70 % 3 9 3399
50 % 3 10 2880
40 % 3 10 2797
30 % 3 10 2596
Entity #2 | Chains: D,E,F,J,K,L
TNF-RELATED APOPTOSIS INDUCING LIGAND protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 6 3724
95 % 1 6 4036
90 % 1 6 4097
70 % 1 6 3988
50 % 1 6 3846
40 % 1 6 3667
30 % 16 62 294

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures