Sequence Similarity Clusters for the Entities in PDB 1DTT

Entity #1 | Chains: A
HIV-1 RT A-CHAIN protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 43 61 500
95 % 104 237 106 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 104 237 111
70 % 104 237 126
50 % 105 238 152
40 % 105 238 169
30 % 105 238 184
Entity #2 | Chains: B
HIV-1 RT B-CHAIN protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 40 57 627
95 % 100 231 115 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.6
PDBFlex
90 % 100 231 118
70 % 100 231 137
50 % 101 232 164
40 % 101 232 180
30 % 101 232 193

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.