Sequence Similarity Clusters for the Entities in PDB 1DTQ

Entity #1 | Chains: A
HIV-1 RT A-CHAIN protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 61 539
95 % 120 255 92
90 % 120 255 96
70 % 120 255 113
50 % 121 256 151
40 % 121 257 164
30 % 121 257 176
Entity #2 | Chains: B
HIV-1 RT B-CHAIN protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 57 666
95 % 116 249 116 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 116 249 120
70 % 116 249 135
50 % 117 251 160
40 % 117 251 175
30 % 117 251 187

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures