Sequence Similarity Clusters for the Entities in PDB 1DTD

Entity #1 | Chains: A
CARBOXYPEPTIDASE A2 protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57900
95 % 1 1 41427
90 % 1 1 39533
70 % 1 1 35058
50 % 15 44 882
40 % 27 83 408
30 % 38 97 361
Entity #2 | Chains: B
METALLOCARBOXYPEPTIDASE INHIBITOR protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 25326
95 % 1 5 10321 Flexibility: Medium
Max RMSD: 8.7, Avg RMSD: 3.8
PDBFlex
90 % 1 5 10193
70 % 1 5 9673
50 % 1 5 8752
40 % 1 5 8017
30 % 1 5 7068

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures