Sequence Similarity Clusters for the Entities in PDB 1DTD

Entity #1 | Chains: A
CARBOXYPEPTIDASE A2 protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57236
95 % 1 1 40961
90 % 1 1 39103
70 % 1 1 34692
50 % 15 44 873
40 % 27 83 393
30 % 38 97 344
Entity #2 | Chains: B
METALLOCARBOXYPEPTIDASE INHIBITOR protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 24982
95 % 1 5 10174 Flexibility: Medium
Max RMSD: 8.7, Avg RMSD: 3.8
PDBFlex
90 % 1 5 10049
70 % 1 5 9543
50 % 1 5 8635
40 % 1 5 7918
30 % 1 5 6983

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures