Sequence Similarity Clusters for the Entities in PDB 1DSZ

Entity #1 | Chains: C
DNA (5'-D(*CP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*AP*G)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*G)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
RETINOIC ACID RECEPTOR ALPHA protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73069
95 % 1 2 36805
90 % 1 2 35117
70 % 1 2 31186
50 % 2 34 859
40 % 2 37 817
30 % 2 37 812
Entity #4 | Chains: B
RETINOIC ACID RECEPTOR RXR-ALPHA protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 3200
95 % 1 9 3468
90 % 1 9 3533
70 % 1 12 2977
50 % 3 34 859
40 % 3 37 817
30 % 3 37 812

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures