Sequence Similarity Clusters for the Entities in PDB 1DSZ

Entity #1 | Chains: C
DNA (5'-D(*CP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*AP*G)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*G)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
RETINOIC ACID RECEPTOR ALPHA protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69343
95 % 1 2 34985
90 % 1 2 33446
70 % 1 2 29821
50 % 2 68 821
40 % 2 37 772
30 % 2 37 766
Entity #4 | Chains: B
RETINOIC ACID RECEPTOR RXR-ALPHA protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 3002
95 % 1 9 3259 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.0
PDBFlex
90 % 1 9 3312
70 % 1 12 2815
50 % 3 68 821
40 % 3 37 772
30 % 3 37 766

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.