Sequence Similarity Clusters for the Entities in PDB 1DQV

Entity #1 | Chains: A
SYNAPTOTAGMIN III protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 19236
95 % 2 2 21360 Flexibility: Medium
Max RMSD: 15.3, Avg RMSD: 7.7
PDBFlex
90 % 2 2 20704
70 % 2 2 18908
50 % 5 9 3383
40 % 6 10 2982
30 % 6 10 2754

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5W5C 6 F Synaptotagmin-1 UNP residues 140-421 10116
2 2R83 1 A, B Synaptotagmin-1 C2A-C2B 9606
3 3HN8 1 A, B, C Synaptotagmin-3 UNP residues 292-587 10116
4 5CCH 5 E, F Synaptotagmin-1 UNP residues 141-421 10116
5 1DQV 1 A SYNAPTOTAGMIN III SOLUBLE PORTION C2A/C2B 10117
6 5KJ7 5 E, F, K Synaptotagmin-1 9% helical (5 helices; 27 residues) 45% beta sheet (19 strands; 129 residues) UNP residues 141-419 10116
7 5CCI 5 E, F Synaptotagmin-1 UNP residues 141-421 10116
8 5CCG 5 E, F, K Synaptotagmin-1 UNP residues 141-421 10116
9 5KJ8 5 E, F, K Synaptotagmin-1 UNP residues 141-419 10116