Sequence Similarity Clusters for the Entities in PDB 1DQV

Entity #1 | Chains: A
SYNAPTOTAGMIN III protein, length: 296 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 19495
95 % 2 2 17293 Flexibility: Medium
Max RMSD: 15.3, Avg RMSD: 7.7
PDBFlex
90 % 2 2 16949
70 % 2 2 15749
50 % 5 9 3062
40 % 6 10 2729
30 % 6 10 2559

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5W5C 6 F Synaptotagmin-1 UNP residues 140-421 10116 2.6.1.22 | Details
2 2R83 1 A, B Synaptotagmin-1 C2A-C2B 9606
3 3HN8 1 A, B, C Synaptotagmin-3 UNP residues 292-587 10116
4 5CCH 5 E, F Synaptotagmin-1 UNP residues 141-421 10116 2.6.1.22 | Details
5 1DQV 1 A SYNAPTOTAGMIN III SOLUBLE PORTION C2A/C2B 10117
6 5KJ7 5 E, F, K Synaptotagmin-1 9% helical (5 helices; 27 residues) 45% beta sheet (19 strands; 129 residues) UNP residues 141-419 10116 2.6.1.22 | Details
7 5CCI 5 E, F Synaptotagmin-1 UNP residues 141-421 10116 2.6.1.22 | Details
8 5CCG 5 E, F, K Synaptotagmin-1 UNP residues 141-421 10116 2.6.1.22 | Details
9 5KJ8 5 E, F, K Synaptotagmin-1 UNP residues 141-419 10116 2.6.1.22 | Details