Sequence Similarity Clusters for the Entities in PDB 1DQQ

Entity #1 | Chains: A,C
ANTI-LYSOZYME ANTIBODY HYHEL-63 (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 14 4416
95 % 3 31 1435 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 5 39 1096
70 % 346 2553 1
50 % 710 5180 1
40 % 871 5834 1
30 % 1072 7269 1
Entity #2 | Chains: B,D
ANTI-LYSOZYME ANTIBODY HYHEL-63 (HEAVY CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 7498
95 % 1 11 6269 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 1 12 5385
70 % 346 2511 2
50 % 711 5180 1
40 % 872 5834 1
30 % 1073 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures