Sequence Similarity Clusters for the Entities in PDB 1DQQ

Entity #1 | Chains: A,C
ANTI-LYSOZYME ANTIBODY HYHEL-63 (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 12 4454
95 % 3 29 1652 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 5 37 1204
70 % 323 2416 1
50 % 661 4892 1
40 % 661 4892 1
30 % 717 5759 1
Entity #2 | Chains: B,D
ANTI-LYSOZYME ANTIBODY HYHEL-63 (HEAVY CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 13262
95 % 1 11 5952 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 1 12 5280
70 % 322 2366 2
50 % 662 4892 1
40 % 662 4892 1
30 % 718 5759 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures