Sequence Similarity Clusters for the Entities in PDB 1DQQ

Entity #1 | Chains: A,C
ANTI-LYSOZYME ANTIBODY HYHEL-63 (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 12 4368
95 % 3 29 1620 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 5 37 1183
70 % 310 2346 1
50 % 635 4752 1
40 % 635 4752 1
30 % 688 5606 1
Entity #2 | Chains: B,D
ANTI-LYSOZYME ANTIBODY HYHEL-63 (HEAVY CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 13035
95 % 1 11 5860 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 1 12 5186
70 % 309 2299 2
50 % 636 4752 1
40 % 636 4752 1
30 % 689 5606 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.