Sequence Similarity Clusters for the Entities in PDB 1DQM

Entity #1 | Chains: L
ANTI-LYSOZYME ANTIBODY HYHEL-63 (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 14 4408
95 % 18 31 1435 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 21 39 1095
70 % 875 2538 1
50 % 1793 5152 1
40 % 2075 5806 1
30 % 2526 7240 1
Entity #2 | Chains: H
ANTI-LYSOZYME ANTIBODY HYHEL-63 (HEAVY CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 7484
95 % 8 11 6260 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 9 12 5377
70 % 866 2497 2
50 % 1794 5152 1
40 % 2076 5806 1
30 % 2527 7240 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures