Sequence Similarity Clusters for the Entities in PDB 1DQM

Entity #1 | Chains: L
ANTI-LYSOZYME ANTIBODY HYHEL-63 (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 12 4538
95 % 18 31 1388 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 21 39 1076
70 % 859 2474 1
50 % 1756 5011 1
40 % 1756 5011 1
30 % 2004 5941 1
Entity #2 | Chains: H
ANTI-LYSOZYME ANTIBODY HYHEL-63 (HEAVY CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 13492
95 % 8 11 6042 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 9 12 5371
70 % 847 2424 2
50 % 1757 5011 1
40 % 1757 5011 1
30 % 2005 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures