Sequence Similarity Clusters for the Entities in PDB 1DQM

Entity #1 | Chains: L
ANTI-LYSOZYME ANTIBODY HYHEL-63 (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 12 4420
95 % 17 29 1634 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 20 37 1194
70 % 820 2392 1
50 % 1677 4843 1
40 % 1677 4843 1
30 % 1884 5705 1
Entity #2 | Chains: H
ANTI-LYSOZYME ANTIBODY HYHEL-63 (HEAVY CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 13177
95 % 8 11 5921 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 9 12 5243
70 % 808 2342 2
50 % 1678 4843 1
40 % 1678 4843 1
30 % 1885 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures