Sequence Similarity Clusters for the Entities in PDB 1DQM

Entity #1 | Chains: L
ANTI-LYSOZYME ANTIBODY HYHEL-63 (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 12 4169
95 % 17 25 1835 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.6
PDBFlex
90 % 20 33 1281
70 % 626 1845 2
50 % 1566 4545 1
40 % 1566 4545 1
30 % 1753 5350 1
Entity #2 | Chains: H
ANTI-LYSOZYME ANTIBODY HYHEL-63 (HEAVY CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 12595
95 % 8 11 5637 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 9 12 4967
70 % 755 2201 1
50 % 1567 4545 1
40 % 1567 4545 1
30 % 1754 5350 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.