Sequence Similarity Clusters for the Entities in PDB 1DQJ

Entity #1 | Chains: A
ANTI-LYSOZYME ANTIBODY HYHEL-63 (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 12 4203
95 % 13 25 1851 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 16 33 1290
70 % 606 2264 1
50 % 1244 4587 1
40 % 1244 4587 1
30 % 1381 5392 1
Entity #2 | Chains: B
ANTI-LYSOZYME ANTIBODY HYHEL-63 (HEAVY CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 5 12674
95 % 4 11 5679
90 % 5 12 5002
70 % 599 2222 2
50 % 1245 4587 1
40 % 1245 4587 1
30 % 1382 5392 1
Entity #3 | Chains: C
LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 520 646 3
95 % 571 699 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 581 716 5
70 % 782 933 7
50 % 786 941 7
40 % 806 975 11
30 % 806 975 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.