Sequence Similarity Clusters for the Entities in PDB 1DQJ

Entity #1 | Chains: A
ANTI-LYSOZYME ANTIBODY HYHEL-63 (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 12 4293
95 % 13 25 1874 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 16 33 1303
70 % 613 2287 1
50 % 1258 4633 1
40 % 1258 4633 1
30 % 1401 5461 1
Entity #2 | Chains: B
ANTI-LYSOZYME ANTIBODY HYHEL-63 (HEAVY CHAIN) protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 12871
95 % 4 11 5782 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 5 12 5108
70 % 606 2244 2
50 % 1259 4633 1
40 % 1259 4633 1
30 % 1402 5461 1
Entity #3 | Chains: C
LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 527 655 3
95 % 578 708 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 588 725 5
70 % 789 942 7
50 % 793 950 8
40 % 813 984 11
30 % 813 984 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.