Sequence Similarity Clusters for the Entities in PDB 1DQD

Entity #1 | Chains: L
FAB HGR-2 F6 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59475
95 % 2 10 3520 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.3
PDBFlex
90 % 27 145 141
70 % 728 2287 1
50 % 1493 4633 1
40 % 1493 4633 1
30 % 1677 5461 1
Entity #2 | Chains: H
FAB HGR-2 F6 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59397
95 % 1 1 41756
90 % 5 12 3563
70 % 721 2244 2
50 % 1494 4633 1
40 % 1494 4633 1
30 % 1678 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2W9D 2 L ICSM 18-ANTI-PRP THERAPEUTIC FAB LIGHT CHAIN 10090
2 3OZ9 1 L Fab NC-1 kappa light chain 10090
3 4EBQ 2 L anti-Vaccinia D8L antigen monoclonal IgG2a antibody LA5, light chain 10090
4 4M1G 1 L Murine IgG2a A27D7 Light chain Fab domain 10090
5 1YQV 1 L HyHEL-5 Antibody Light Chain IG*G1 FAB FRAGMENT (HY/HEL-5) 10090
6 1SEQ 1 L Monoclonal Antibody MNAC13 FAB Light Chain 10090
7 5L88 2 L Anti-afamin antibody N14, Fab fragment, light chain 10090
8 5L9D 2 L MOUSE ANTIBODY FAB FRAGMENT, IGG1-KAPPA LIGHT CHAIN 10090
9 5LGH 2 L MOUSE ANTIBODY FAB FRAGMENT, IGG1-KAPPA LIGHT CHAIN IGG1-KAPPA LIGHT CHAIN, 1-214 10090
10 5L7X 2 L Mouse Antibody Fab Fragment, IgG1-kappa Light Chain IgG1-kappa light chain, 1-214 10090
11 1E6O 2 L IMMUNOGLOBULIN LIGHT CHAIN OBTAINED BY PEPSIN CLEAVAGE (FAB') LIGHT CHAIN 1-210 10090
12 2FAT 1 L FAB ATN-615, light chain 10090
13 2FBJ 1 L IGA-KAPPA J539 FAB (LIGHT CHAIN) 10090
14 2BRR 2 L, X MN20B9.34 ANTI-P1.4 ANTIBODY, FAB LIGHT CHAIN 10090
15 3LS5 1 L Light chain of antibody Fab fragment 10090
16 1ORS 1 A 33H1 Fab light chain 10090
17 2ZKH 1 L Monoclonal TN1 FAB light chain 9606
18 35C8 1 L IGG 5C8 FAB 10090
19 4DVB 2 B, L Fab fragment of pro-uPA antibody mAb-112 10090
20 2FD6 2 L L chain of Fab of ATN-615 anti-uPAR antibody 10090
21 3LS4 1 L Light chain of antibody Fab fragment 10090
22 4ETQ 2 B, L anti-vaccinia D8L antigen murine monoclonal IgG2a antibody LA5, light chain Fab 10090
23 25C8 1 L IGG 5C8 FAB 10090
24 4HXA 1 L 13D9 FAB LIGHT CHAIN 10090
25 1SY6 1 L OKT3 Fab light chain fab fragment light chain 10090
26 1CLO 1 L A5B7 MONOCLONAL ANTIBODY ANTI-CARCINOEMBRYONIC ANTIGEN MONOCLONAL ANTIBODY A5B7 ANTIGEN BINDING FRAGMENT, FAB 10090
27 1DQD 1 L FAB HGR-2 F6 LIGHT CHAIN 10090
28 1AY1 1 L TP7 FAB FAB 10090
29 4LVO 2 B NIMP.M7 Fab light chain 10090
30 4LVN 2 B NIMP.M7 Fab light chain 10090
31 1BGX 2 L TP7 MAB FAB 10090
32 2BMK 1 A, L FAB FRAGMENT OF CATALYTIC ANTIBODY 15A9, LIGHT CHAIN 10090
33 4KI5 2 D MURINE MONOCLONAL 3E6 FAB LIGHT CHAIN 10090
34 2J4W 3 L FAB FRAGMENT OF MONOCLONAL ANTIBODY F8.12.19 MONOCLONAL ANTIBODY ISOTYPE IS IGG1, KAPPA 10090
35 15C8 1 L IGG 5C8 FAB (LIGHT CHAIN) FAB 10090
36 1WC7 1 A, L FAB FRAGMENT OF CATALYTIC ANTIBODY 15A9, LIGHT CHAIN 10090
37 2Z92 2 B Anti-ciguatoxin antibody 10C9 Fab light chain 10090
38 1CF8 1 L PROTEIN (CATALYTIC ANTIBODY 19A4 (LIGHT CHAIN)) FAB, VARIABLE REGION 10090
39 1A6T 1 A, C IGG1 FAB1-IA FAB (LIGHT CHAIN) FAB FRAGMENT 10090
40 4WFE 2 D, F ANTI-TRAAK ANTIBODY 13E9 FAB FRAGMENT LIGHT CHAIN 10090
41 4NCC 1 1, L Fab fragment light 10090
42 1BQL 1 L HYHEL-5 FAB (LIGHT CHAIN) 10090
43 1FOR 1 L IGG2A-KAPPA 17-IA FAB (LIGHT CHAIN) 10090
44 4WFF 2 D, F ANTI-TRAAK ANTIBODY 13E9 FAB FRAGMENT LIGHT CHAIN 10090
45 4XZU 2 B, F 3E6 antibody Fab light chain 10090
46 1WCB 1 A, L FAB FRAGMENT OF CATALYTIC ANTIBODY 15A9, LIGHT CHAIN 10090
47 4ENE 3 D, F light chain of Fab fragment 10090
48 4ZSO 1 A, C Antibody Light Chain 9606
49 4QNP 2 F, L neutralizing antibody, light chain Fab 10090
50 3BT2 3 L anti-uPAR antibody, light chain Fab fragment, light chain 10090
51 4QWW 2 C, E Fab410 antibody light chain 10090
52 1V7M 1 L, M Monoclonal TN1 Fab Light Chain Fab Light Chain 10090
53 2Z91 2 B, D Anti-ciguatoxin antibody 10C9 FAB light chain 10090
54 1EO8 3 L ANTIBODY (LIGHT CHAIN) FAB FRAGMENT OF ANTIBODY BH151 10090
55 4KPH 1 L, M N62 light chain 10090
56 4I9W 2 D, F ANTIBODY FAB FRAGMENT LIGHT CHAIN 10090
57 1PSK 1 L ANTIBODY FAB 10090
58 1BAF 1 L IGG1-KAPPA AN02 FAB (LIGHT CHAIN) 10090
59 1HQ4 1 A, C ANTIBODY HA5-19A4 FAB LIGHT CHAIN VARIABLE REGIONS OF FAB LIGHT AND HEAVY CHAINS 10090
60 4XP9 2 L ANTIBODY FRAGMENT HEAVY CHAIN-PROTEIN, 9D5-HEAVY CHAIN 10090
61 4FFV 2 C, L 11A19 Fab light chain 10090
62 4C83 2 B, D LPT3 LIGHT CHAIN 10090
63 4AG4 3 L MONOCLONAL ANTIBODY 3E3 LIGHT CHAIN MONOCLONAL ANTIBODY AGAINST HUMAN DDR1 10090
64 5WTG 1 A, C FAB Light chain 10090
65 4KK8 3 D, F Fab, light chain 10090
66 2W9E 3 L ICSM 18-ANTI-PRP THERAPEUTIC FAB LIGHT CHAIN 10090
67 1IAI 3 M ANTI-IDIOTYPIC FAB 409.5.3 (IGG2A) 10090
68 1OTS 3 D, F Fab fragment (light chain) 10090
69 2J5L 2 B FAB FRAGMENT OF MONOCLONAL ANTIBODY F8.12.19 MONOCLONAL ANTIBODY ISOTYPE IS IGG1, KAPPA ANTIGEN-BINDING FRAGMENT FAB, LIGHT CHAIN 10090
70 3OPZ 3 L, M, N light chain of the Fab fragment of immunoglobulin G 10090
71 4WFG 2 D, F ANTI-TRAAK ANTIBODY 13E9 FAB FRAGMENT LIGHT CHAIN 10090
72 1V7N 1 L, M, N, O Monoclonal TN1 Fab Light Chain Fab Light Chain 10090
73 4WFH 2 D, F ANTI-TRAAK ANTIBODY 13E9 FAB FRAGMENT LIGHT CHAIN 10090
74 4XP1 2 L Antibody fragment light chain 10090
75 4KJQ 3 D, F Fab, light chain 10090
76 5D8J 3 L HA3 Fab Light Chain 10090
77 1AIF 1 A, L ANTI-IDIOTYPIC FAB 409.5.3 (IGG2A) FAB (LIGHT CHAIN) 10090
78 1E6J 2 L IMMUNOGLOBULIN OBTAINED BY PAPAIN CLEAVAGE (FAB) LIGHT CHAIN 1-210 10090
79 4LOU 3 D, F Fab light chain 10090
80 3W2D 2 L Monoclonal Antibody 3E2 Fab figment light chain 10090
81 4XP4 2 L ANTIBODY FRAGMENT HEAVY CHAIN-PROTEIN, 9D5-HEAVY CHAIN 10090
82 2Z93 2 B, D Anti-ciguatoxin antibody 10C9 Fab light chain 10090
83 5MHR 2 G, H, J, L, O, Q 9BG5 Fab light chain,LOC100046793 protein,MAb 110 light chain DUE TO POORLY DEFINED ELECTRON DENSITY THE CONSTANT REGION OF THE FAB FRAGMENT WAS NOT BUILT FOR CHAIN J AND CHAIN L 10090
84 4M48 2 L 9D5 antibody, light chain Fab, papain cleavage fragment 10090
85 4XNX 2 L antibody fragment light chain 10090
86 4KK9 3 D, F Fab, light chain 10090
87 1FIG 1 L IGG1-KAPPA 1F7 FAB (LIGHT CHAIN) 10090
88 4KKA 3 D, F Fab, light chain 10090
89 5HD8 3 D, F FAB FRAGMENT (LIGHT CHAIN) 10090
90 4XNU 2 L antibody fragment light chain 10090
91 4XPA 2 L Antibody fragment heavy chain-protein, 9D5-heavy chain 10090
92 4XPH 2 L Antibody fragment light chain 10090
93 4KKL 3 D, F Fab, light chain 10090
94 3DET 3 D, F Fab fragment, Light chain 10090
95 4KJW 3 D, F Fab, light chain 10090
96 4DW2 3 L Fab fragment of pro-uPA antibody mAb-112 10090
97 4KKB 3 D, F Fab, light chain 10090
98 4FG6 3 D, F Fab fragment (Light chain) 10090
99 3EJZ 3 D, F Fab fragment, Light chain 10090
100 4KJP 3 D, F light chain of Fab fragment 10090
101 1OB1 1 A, D ANTIBODY, HEAVY CHAIN FAB FRAGMENT 10090
102 3I50 2 L murine kappa light chain of E53 monoclonal antibody Fab 10090
103 4XP6 2 L Antibody fragment heavy chain-protein, 9D5-heavy chain 10090
104 4XPB 2 L Antibody fragment heavy chain-protein, 9D5-heavy chain 10090
105 4KKC 3 D, F Fab, light chain 10090
106 4KK5 3 D, F Fab, light chain 10090
107 4KK6 3 D, F Fab, light chain 10090
108 2HT4 3 D, F Fab fragment, Light chain 10090
109 3EJY 3 D, F Fab fragment, Light chain 10090
110 4XPT 2 L antibody fragment light chain 10090
111 4XPF 2 L ANTIBODY FRAGMENT HEAVY CHAIN-PROTEIN, 9D5-HEAVY CHAIN 10090
112 2R9H 3 D, F Fab fragment 10090
113 4XPG 2 L antibody fragment light chain 10090
114 1ORQ 1 A 6E1 Fab light chain 10090
115 4MQX 3 D, F ERIC 10090
116 2FEE 3 L, O Fab fragment, light chain Light Chain 9606
117 4FFW 2 C, L Fab light chain 10090
118 4XP5 2 L Antibody fragment heavy chain-protein, 9D5-heavy chain 10090
119 2FED 3 D, F Fab fragment, light chain Light Chain 9606
120 2HT3 3 D, F Fab fragment, Light chain 10090
121 2EXW 3 D, F Fab Fragment (Light Chain) 10090
122 2H2P 3 D, F FAB fragment, light chain 10090
123 2H2S 3 D, F FAB fragment, light chain 10090
124 1OTT 3 D, F Fab fragment (Light chain) 10090
125 4Z0B 2 L antibody light chain 10090
126 2HTL 3 D, F Fab fragment, Light chain 10090
127 1KEN 3 L, U influenza virus infectivity neutralizing antibody (light chain) 10090
128 2HT2 3 D, F Fab fragment, light chain 10090
129 3NCY 3 S, W Fab Light chain 10090
130 1Z3G 1 L, M 2A8 Fab Light Chain Fab Light Chain 10090
131 2HTK 3 D, F Fab fragment, Light chain 10090
132 2EZ0 3 D, F Fab Fragment (Light Chain) 10090
133 2HLF 3 D, F Fab Fragment, Light chain 10090
134 1OTU 3 D, F Fab fragment (Light chain) 10090
135 4GQ9 1 L Chikungunya virus neutralizing antibody 9.8B Fab fragment light chain 10090
136 2EXY 3 D, F Fab Fragment (Light Chain) 10090
137 5NJ6 3 L Fab3949 L 10090
138 3S62 1 L Fab fragment of antibody 2A8, Light chain 10090
139 2FEC 3 L, O Fab fragment, light chain Light Chain 9606
140 5WTH 4 D FAB Light Chain 10090
141 3J2Y 1 A, C, E, G 9.8B light chain Fab 10090
142 3J2Z 1 A, C, E, G m10 light chain Fab 10090
143 3IXX 4 H, J E53 Fab Fragment (chain L) E53 Fab Fragment 10090
144 3IXY 4 H, J E53 Fab Fragment (chain L) 10090
145 2IFF 1 L IGG1 HYHEL-5 FAB (LIGHT CHAIN) 10090