Sequence Similarity Clusters for the Entities in PDB 1DQD

Entity #1 | Chains: L
FAB HGR-2 F6 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49546
95 % 2 10 3544 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.3
PDBFlex
90 % 27 148 146
70 % 824 2553 1
50 % 1692 5180 1
40 % 1967 5834 1
30 % 2401 7269 1
Entity #2 | Chains: H
FAB HGR-2 F6 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49545
95 % 1 1 41014
90 % 6 14 2792
70 % 817 2511 2
50 % 1693 5180 1
40 % 1968 5834 1
30 % 2402 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2W9D 2 L ICSM 18-ANTI-PRP THERAPEUTIC FAB LIGHT CHAIN 10090
2 3OZ9 1 L Fab NC-1 kappa light chain 10090
3 4EBQ 2 L anti-Vaccinia D8L antigen monoclonal IgG2a antibody LA5, light chain 10090
4 4M1G 1 L Murine IgG2a A27D7 Light chain Fab domain 10090
5 1YQV 1 L HyHEL-5 Antibody Light Chain IG*G1 FAB FRAGMENT (HY/HEL-5) 10090
6 1SEQ 1 L Monoclonal Antibody MNAC13 FAB Light Chain 10090
7 5L88 2 L Anti-afamin antibody N14, Fab fragment, light chain 10090
8 5L9D 2 L MOUSE ANTIBODY FAB FRAGMENT, IGG1-KAPPA LIGHT CHAIN 10090
9 5LGH 2 L MOUSE ANTIBODY FAB FRAGMENT, IGG1-KAPPA LIGHT CHAIN IGG1-KAPPA LIGHT CHAIN, 1-214 10090
10 5L7X 2 L Mouse Antibody Fab Fragment, IgG1-kappa Light Chain IgG1-kappa light chain, 1-214 10090
11 1E6O 2 L IMMUNOGLOBULIN LIGHT CHAIN OBTAINED BY PEPSIN CLEAVAGE (FAB') LIGHT CHAIN 1-210 10090
12 2FAT 1 L FAB ATN-615, light chain 10090
13 2FBJ 1 L IGA-KAPPA J539 FAB (LIGHT CHAIN) 10090
14 2BRR 2 L, X MN20B9.34 ANTI-P1.4 ANTIBODY, FAB LIGHT CHAIN 10090
15 3LS5 1 L Light chain of antibody Fab fragment 10090
16 1ORS 1 A 33H1 Fab light chain 10090
17 2ZKH 1 L Monoclonal TN1 FAB light chain 9606
18 35C8 1 L IGG 5C8 FAB 10090
19 4DVB 2 B, L Fab fragment of pro-uPA antibody mAb-112 10090
20 2FD6 2 L L chain of Fab of ATN-615 anti-uPAR antibody 10090
21 3LS4 1 L Light chain of antibody Fab fragment 10090
22 4ETQ 2 B, L anti-vaccinia D8L antigen murine monoclonal IgG2a antibody LA5, light chain Fab 10090
23 25C8 1 L IGG 5C8 FAB 10090
24 4HXA 1 L 13D9 FAB LIGHT CHAIN 10090
25 1SY6 1 L OKT3 Fab light chain fab fragment light chain 10090
26 1CLO 1 L A5B7 MONOCLONAL ANTIBODY ANTI-CARCINOEMBRYONIC ANTIGEN MONOCLONAL ANTIBODY A5B7 ANTIGEN BINDING FRAGMENT, FAB 10090
27 1DQD 1 L FAB HGR-2 F6 LIGHT CHAIN 10090
28 1AY1 1 L TP7 FAB FAB 10090
29 4LVO 2 B NIMP.M7 Fab light chain 10090
30 4LVN 2 B NIMP.M7 Fab light chain 10090
31 1BGX 2 L TP7 MAB FAB 10090
32 6BIT 2 K, L KWAR23 Fab light chain 10090
33 2BMK 1 A, L FAB FRAGMENT OF CATALYTIC ANTIBODY 15A9, LIGHT CHAIN 10090
34 4KI5 2 D MURINE MONOCLONAL 3E6 FAB LIGHT CHAIN 10090
35 2J4W 3 L FAB FRAGMENT OF MONOCLONAL ANTIBODY F8.12.19 MONOCLONAL ANTIBODY ISOTYPE IS IGG1, KAPPA 10090
36 15C8 1 L IGG 5C8 FAB (LIGHT CHAIN) FAB 10090
37 1WC7 1 A, L FAB FRAGMENT OF CATALYTIC ANTIBODY 15A9, LIGHT CHAIN 10090
38 2Z92 2 B Anti-ciguatoxin antibody 10C9 Fab light chain 10090
39 1CF8 1 L PROTEIN (CATALYTIC ANTIBODY 19A4 (LIGHT CHAIN)) FAB, VARIABLE REGION 10090
40 1A6T 1 A, C IGG1 FAB1-IA FAB (LIGHT CHAIN) FAB FRAGMENT 10090
41 4WFE 2 D, F ANTI-TRAAK ANTIBODY 13E9 FAB FRAGMENT LIGHT CHAIN 10090
42 4NCC 1 1, L Fab fragment light 10090
43 1BQL 1 L HYHEL-5 FAB (LIGHT CHAIN) 10090
44 1FOR 1 L IGG2A-KAPPA 17-IA FAB (LIGHT CHAIN) 10090
45 4WFF 2 D, F ANTI-TRAAK ANTIBODY 13E9 FAB FRAGMENT LIGHT CHAIN 10090
46 5YSL 2 B, D, F, H 1H1 light chain 10090
47 4XZU 2 B, F 3E6 antibody Fab light chain 10090
48 1WCB 1 A, L FAB FRAGMENT OF CATALYTIC ANTIBODY 15A9, LIGHT CHAIN 10090
49 4ENE 3 D, F light chain of Fab fragment 10090
50 4ZSO 1 A, C Antibody Light Chain 9606
51 4QNP 2 F, L neutralizing antibody, light chain Fab 10090
52 3BT2 3 L anti-uPAR antibody, light chain Fab fragment, light chain 10090
53 4QWW 2 C, E Fab410 antibody light chain 10090
54 1V7M 1 L, M Monoclonal TN1 Fab Light Chain Fab Light Chain 10090
55 2Z91 2 B, D Anti-ciguatoxin antibody 10C9 FAB light chain 10090
56 1EO8 3 L ANTIBODY (LIGHT CHAIN) FAB FRAGMENT OF ANTIBODY BH151 10090
57 4KPH 1 L, M N62 light chain 10090
58 4I9W 2 D, F ANTIBODY FAB FRAGMENT LIGHT CHAIN 10090
59 1PSK 1 L ANTIBODY FAB 10090
60 1BAF 1 L IGG1-KAPPA AN02 FAB (LIGHT CHAIN) 10090
61 1HQ4 1 A, C ANTIBODY HA5-19A4 FAB LIGHT CHAIN VARIABLE REGIONS OF FAB LIGHT AND HEAVY CHAINS 10090
62 4XP9 2 L ANTIBODY FRAGMENT HEAVY CHAIN-PROTEIN, 9D5-HEAVY CHAIN 10090
63 4FFV 2 C, L 11A19 Fab light chain 10090
64 4C83 2 B, D LPT3 LIGHT CHAIN 10090
65 4AG4 3 L MONOCLONAL ANTIBODY 3E3 LIGHT CHAIN MONOCLONAL ANTIBODY AGAINST HUMAN DDR1 10090
66 5WTG 1 A, C FAB Light chain 10090
67 4KK8 3 D, F Fab, light chain 10090
68 2W9E 3 L ICSM 18-ANTI-PRP THERAPEUTIC FAB LIGHT CHAIN 10090
69 1IAI 3 M ANTI-IDIOTYPIC FAB 409.5.3 (IGG2A) 10090
70 1OTS 3 D, F Fab fragment (light chain) 10090
71 2J5L 2 B FAB FRAGMENT OF MONOCLONAL ANTIBODY F8.12.19 MONOCLONAL ANTIBODY ISOTYPE IS IGG1, KAPPA ANTIGEN-BINDING FRAGMENT FAB, LIGHT CHAIN 10090
72 3OPZ 3 L, M, N light chain of the Fab fragment of immunoglobulin G 10090
73 4WFG 2 D, F ANTI-TRAAK ANTIBODY 13E9 FAB FRAGMENT LIGHT CHAIN 10090
74 1V7N 1 L, M, N, O Monoclonal TN1 Fab Light Chain Fab Light Chain 10090
75 4WFH 2 D, F ANTI-TRAAK ANTIBODY 13E9 FAB FRAGMENT LIGHT CHAIN 10090
76 4XP1 2 L Antibody fragment light chain 10090
77 4KJQ 3 D, F Fab, light chain 10090
78 5D8J 3 L HA3 Fab Light Chain 10090
79 1AIF 1 A, L ANTI-IDIOTYPIC FAB 409.5.3 (IGG2A) FAB (LIGHT CHAIN) 10090
80 1E6J 2 L IMMUNOGLOBULIN OBTAINED BY PAPAIN CLEAVAGE (FAB) LIGHT CHAIN 1-210 10090
81 4LOU 3 D, F Fab light chain 10090
82 3W2D 2 L Monoclonal Antibody 3E2 Fab figment light chain 10090
83 4XP4 2 L ANTIBODY FRAGMENT HEAVY CHAIN-PROTEIN, 9D5-HEAVY CHAIN 10090
84 2Z93 2 B, D Anti-ciguatoxin antibody 10C9 Fab light chain 10090
85 5MHR 2 G, H, J, L, O, Q 9BG5 Fab light chain,LOC100046793 protein,MAb 110 light chain DUE TO POORLY DEFINED ELECTRON DENSITY THE CONSTANT REGION OF THE FAB FRAGMENT WAS NOT BUILT FOR CHAIN J AND CHAIN L 10090
86 4M48 2 L 9D5 antibody, light chain Fab, papain cleavage fragment 10090
87 4XNX 2 L antibody fragment light chain 10090
88 4KK9 3 D, F Fab, light chain 10090
89 1FIG 1 L IGG1-KAPPA 1F7 FAB (LIGHT CHAIN) 10090
90 4KKA 3 D, F Fab, light chain 10090
91 5HD8 3 D, F FAB FRAGMENT (LIGHT CHAIN) 10090
92 4XNU 2 L antibody fragment light chain 10090
93 4XPA 2 L Antibody fragment heavy chain-protein, 9D5-heavy chain 10090
94 4XPH 2 L Antibody fragment light chain 10090
95 4KKL 3 D, F Fab, light chain 10090
96 3DET 3 D, F Fab fragment, Light chain 10090
97 4KJW 3 D, F Fab, light chain 10090
98 4DW2 3 L Fab fragment of pro-uPA antibody mAb-112 10090
99 4KKB 3 D, F Fab, light chain 10090
100 4FG6 3 D, F Fab fragment (Light chain) 10090
101 3EJZ 3 D, F Fab fragment, Light chain 10090
102 4KJP 3 D, F light chain of Fab fragment 10090
103 1OB1 1 A, D ANTIBODY, HEAVY CHAIN FAB FRAGMENT 10090
104 3I50 2 L murine kappa light chain of E53 monoclonal antibody Fab 10090
105 4XP6 2 L Antibody fragment heavy chain-protein, 9D5-heavy chain 10090
106 4XPB 2 L Antibody fragment heavy chain-protein, 9D5-heavy chain 10090
107 4KKC 3 D, F Fab, light chain 10090
108 4KK5 3 D, F Fab, light chain 10090
109 4KK6 3 D, F Fab, light chain 10090
110 2HT4 3 D, F Fab fragment, Light chain 10090
111 3EJY 3 D, F Fab fragment, Light chain 10090
112 4XPT 2 L antibody fragment light chain 10090
113 4XPF 2 L ANTIBODY FRAGMENT HEAVY CHAIN-PROTEIN, 9D5-HEAVY CHAIN 10090
114 2R9H 3 D, F Fab fragment 10090
115 4XPG 2 L antibody fragment light chain 10090
116 1ORQ 1 A 6E1 Fab light chain 10090
117 4MQX 3 D, F ERIC 10090
118 2FEE 3 L, O Fab fragment, light chain Light Chain 9606
119 4FFW 2 C, L Fab light chain 10090
120 4XP5 2 L Antibody fragment heavy chain-protein, 9D5-heavy chain 10090
121 6BDZ 1 L 11G2 Fab Light Chain 10090
122 2FED 3 D, F Fab fragment, light chain Light Chain 9606
123 2HT3 3 D, F Fab fragment, Light chain 10090
124 2EXW 3 D, F Fab Fragment (Light Chain) 10090
125 2H2P 3 D, F FAB fragment, light chain 10090
126 2H2S 3 D, F FAB fragment, light chain 10090
127 1OTT 3 D, F Fab fragment (Light chain) 10090
128 4Z0B 2 L antibody light chain 10090
129 2HTL 3 D, F Fab fragment, Light chain 10090
130 1KEN 3 L, U influenza virus infectivity neutralizing antibody (light chain) 10090
131 2HT2 3 D, F Fab fragment, light chain 10090
132 3NCY 3 S, W Fab Light chain 10090
133 1Z3G 1 L, M 2A8 Fab Light Chain Fab Light Chain 10090
134 2HTK 3 D, F Fab fragment, Light chain 10090
135 2EZ0 3 D, F Fab Fragment (Light Chain) 10090
136 2HLF 3 D, F Fab Fragment, Light chain 10090
137 1OTU 3 D, F Fab fragment (Light chain) 10090
138 4GQ9 1 L Chikungunya virus neutralizing antibody 9.8B Fab fragment light chain 10090
139 2EXY 3 D, F Fab Fragment (Light Chain) 10090
140 5NJ6 3 L Fab3949 L 10090
141 3S62 1 L Fab fragment of antibody 2A8, Light chain 10090
142 2FEC 3 L, O Fab fragment, light chain Light Chain 9606
143 5WTH 4 D FAB Light Chain 10090
144 3J2Y 1 A, C, E, G 9.8B light chain Fab 10090
145 3J2Z 1 A, C, E, G m10 light chain Fab 10090
146 3IXX 4 H, J E53 Fab Fragment (chain L) E53 Fab Fragment 10090
147 3IXY 4 H, J E53 Fab Fragment (chain L) 10090
148 2IFF 1 L IGG1 HYHEL-5 FAB (LIGHT CHAIN) 10090