Sequence Similarity Clusters for the Entities in PDB 1DQD

Entity #1 | Chains: L
FAB HGR-2 F6 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50099
95 % 2 10 3608 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.3
PDBFlex
90 % 29 153 143
70 % 836 2593 1
50 % 1721 5263 1
40 % 2002 5933 1
30 % 2442 7388 1
Entity #2 | Chains: H
FAB HGR-2 F6 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50098
95 % 1 1 41430
90 % 6 14 2848
70 % 830 2550 2
50 % 1722 5263 1
40 % 2003 5933 1
30 % 2443 7388 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures