Sequence Similarity Clusters for the Entities in PDB 1DQD

Entity #1 | Chains: L
FAB HGR-2 F6 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59887
95 % 2 10 3546 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.3
PDBFlex
90 % 27 145 142
70 % 743 2327 1
50 % 1522 4713 1
40 % 1522 4713 1
30 % 1710 5567 1
Entity #2 | Chains: H
FAB HGR-2 F6 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59808
95 % 1 1 42047
90 % 5 12 3593
70 % 735 2280 2
50 % 1523 4713 1
40 % 1523 4713 1
30 % 1711 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.