Sequence Similarity Clusters for the Entities in PDB 1DPP

Entity #1 | Chains: A,C,E,G
DIPEPTIDE BINDING PROTEIN protein, length: 507 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 17747
95 % 2 2 14210 Flexibility: Medium
Max RMSD: 6.5, Avg RMSD: 4.4
PDBFlex
90 % 2 2 13981
70 % 3 3 9817
50 % 5 5 6912
40 % 10 10 2422
30 % 10 10 2308

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures