Sequence Similarity Clusters for the Entities in PDB 1DPJ

Entity #1 | Chains: A
PROTEINASE A protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 6328
95 % 1 11 6027 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 1 11 6027
70 % 1 11 5879
50 % 1 11 5517
40 % 11 128 235
30 % 546 738 30
Entity #2 | Chains: B
PROTEINASE INHIBITOR IA3 PEPTIDE protein, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56570
95 % 1 2 31533 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 2 30214
70 % 1 2 27076
50 % 1 2 23207
40 % 1 2 20447
30 % 1 2 17066

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures