Sequence Similarity Clusters for the Entities in PDB 1DPJ

Entity #1 | Chains: A
PROTEINASE A protein, length: 329 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 14908
95 % 1 11 5586 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 1 11 5607
70 % 1 11 5518
50 % 1 11 5221
40 % 7 116 244
30 % 536 717 31
Entity #2 | Chains: B
PROTEINASE INHIBITOR IA3 PEPTIDE protein, length: 33 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 74610
95 % 1 2 37057 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 2 35376
70 % 1 2 31462
50 % 1 2 26919
40 % 1 2 23791
30 % 1 2 20244

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures