Sequence Similarity Clusters for the Entities in PDB 1DOT

Entity #1 | Chains: A
DUCK OVOTRANSFERRIN protein, length: 686 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40647
95 % 1 2 34260 Flexibility: Medium
Max RMSD: 8.2, Avg RMSD: 8.2
PDBFlex
90 % 1 2 32770
70 % 3 7 10542
50 % 19 51 885
40 % 19 51 910
30 % 19 51 896

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures