Sequence Similarity Clusters for the Entities in PDB 1DOJ

Entity #1 | Chains: A
ALPHA-THROMBIN protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 2253
95 % 81 377 52 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 81 384 48
70 % 81 408 46
50 % 81 408 84
40 % 553 1863 4
30 % 554 1885 6
Entity #2 | Chains: B
HIRUGEN protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures