Sequence Similarity Clusters for the Entities in PDB 1DOJ

Entity #1 | Chains: A
ALPHA-THROMBIN protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 22 2379
95 % 81 378 53 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 81 385 56
70 % 81 409 47
50 % 81 409 85
40 % 559 1885 4
30 % 559 1899 7
Entity #2 | Chains: B
HIRUGEN protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures