Sequence Similarity Clusters for the Entities in PDB 1DOJ

Entity #1 | Chains: A
ALPHA-THROMBIN protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 22 2300
95 % 81 377 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 81 384 39
70 % 81 408 47
50 % 81 408 86
40 % 551 1855 4
30 % 551 1869 7
Entity #2 | Chains: B
HIRUGEN protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures