Sequence Similarity Clusters for the Entities in PDB 1DOJ

Entity #1 | Chains: A
ALPHA-THROMBIN protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 2160
95 % 79 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 79 381 39
70 % 79 405 45
50 % 79 405 81
40 % 514 1695 4
30 % 537 1845 6
Entity #2 | Chains: B
HIRUGEN protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.