Sequence Similarity Clusters for the Entities in PDB 1DOA

Entity #1 | Chains: A
PROTEIN (GTP-BINDING PROTEIN) protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 22 1395
95 % 27 37 902 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.6
PDBFlex
90 % 27 37 935
70 % 58 78 319
50 % 108 137 189
40 % 109 138 205
30 % 625 775 16
Entity #2 | Chains: B
PROTEIN (GDP-DISSOCIATION INHIBITOR 1) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 20901
95 % 3 6 9199 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 2.1
PDBFlex
90 % 3 6 9110
70 % 3 6 8737
50 % 3 6 7904
40 % 3 6 7260
30 % 3 6 6405

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.