Sequence Similarity Clusters for the Entities in PDB 1DOA

Entity #1 | Chains: A
PROTEIN (GTP-BINDING PROTEIN) protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 22 1428
95 % 27 37 921
90 % 27 37 954
70 % 58 79 333
50 % 111 141 192
40 % 112 142 204
30 % 645 797 16
Entity #2 | Chains: B
PROTEIN (GDP-DISSOCIATION INHIBITOR 1) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 21206
95 % 3 6 9331 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 2.0
PDBFlex
90 % 3 6 9231
70 % 3 6 8838
50 % 3 6 8003
40 % 3 6 7354
30 % 3 6 6482

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures