Sequence Similarity Clusters for the Entities in PDB 1DOA

Entity #1 | Chains: A
PROTEIN (GTP-BINDING PROTEIN) protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 23 1407
95 % 28 39 911
90 % 28 39 943
70 % 60 82 332
50 % 113 143 196
40 % 114 144 205
30 % 668 822 16
Entity #2 | Chains: B
PROTEIN (GDP-DISSOCIATION INHIBITOR 1) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 21942
95 % 3 5 9616 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 2.0
PDBFlex
90 % 3 5 9516
70 % 3 5 9096
50 % 3 5 8234
40 % 3 5 7567
30 % 3 5 6664

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures