Sequence Similarity Clusters for the Entities in PDB 1DOA

Entity #1 | Chains: A
PROTEIN (GTP-BINDING PROTEIN) protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 22 1379
95 % 27 37 896 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.5
PDBFlex
90 % 27 37 929
70 % 58 78 313
50 % 108 137 186
40 % 109 138 202
30 % 620 768 16
Entity #2 | Chains: B
PROTEIN (GDP-DISSOCIATION INHIBITOR 1) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 20564
95 % 3 6 9090 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 2.1
PDBFlex
90 % 3 6 9005
70 % 3 6 8605
50 % 3 6 7793
40 % 3 6 7165
30 % 3 6 6319

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.