Sequence Similarity Clusters for the Entities in PDB 1DOA

Entity #1 | Chains: A
PROTEIN (GTP-BINDING PROTEIN) protein, length: 191 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 23 1381
95 % 28 39 904
90 % 28 39 934
70 % 60 82 326
50 % 113 143 193
40 % 114 144 203
30 % 663 817 16
Entity #2 | Chains: B
PROTEIN (GDP-DISSOCIATION INHIBITOR 1) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 21628
95 % 3 5 9475 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 2.0
PDBFlex
90 % 3 5 9376
70 % 3 5 8973
50 % 3 5 8126
40 % 3 5 7472
30 % 3 5 6584

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures