Sequence Similarity Clusters for the Entities in PDB 1DNW

Entity #1 | Chains: A,B
MYELOPEROXIDASE protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 15 1186
95 % 5 15 1588 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 5 15 1619
70 % 5 15 1638
50 % 5 15 1677
40 % 5 15 1692
30 % 5 15 1657
Entity #2 | Chains: C,D
MYELOPEROXIDASE protein, length: 466 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 15 1159
95 % 5 15 1557 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 5 15 1593
70 % 5 15 1599
50 % 5 15 1643
40 % 5 15 1660
30 % 5 15 1630

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures