Sequence Similarity Clusters for the Entities in PDB 1DNK

Entity #1 | Chains: B
DNA (5'-D(*GP*GP*TP*AP*TP*AP*C)-3') dna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
DNA (5'-D(*GP*GP*TP*AP*TP*AP*CP*C)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (DEOXYRIBONUCLEASE I (DNASE I) (E.C.3.1.21.1)) protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 10 5826
95 % 7 11 5835 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 7 11 5850
70 % 8 12 5146
50 % 8 12 4919
40 % 8 12 4653
30 % 8 12 4255

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures