Sequence Similarity Clusters for the Entities in PDB 1DN0

Entity #1 | Chains: A,C
IGM-KAPPA COLD AGGLUTININ (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 20945
95 % 26 79 267
90 % 214 697 3
70 % 730 2280 1
50 % 1497 4619 1
40 % 1497 4619 1
30 % 1678 5440 1
Entity #2 | Chains: B,D
IGM-KAPPA COLD AGGLUTININ (HEAVY CHAIN) protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 38892
95 % 1 2 17878
90 % 1 2 17501
70 % 1 9 4312
50 % 1498 4619 1
40 % 1498 4619 1
30 % 1679 5440 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.