Sequence Similarity Clusters for the Entities in PDB 1DN0

Entity #1 | Chains: A,C
IGM-KAPPA COLD AGGLUTININ (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21254
95 % 26 84 247 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 1.9
PDBFlex
90 % 224 721 3
70 % 748 2329 1
50 % 1532 4717 1
40 % 1532 4717 1
30 % 1720 5571 1
Entity #2 | Chains: B,D
IGM-KAPPA COLD AGGLUTININ (HEAVY CHAIN) protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39449
95 % 1 2 18127 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 1 2 17752
70 % 1 9 4380
50 % 1533 4717 1
40 % 1533 4717 1
30 % 1721 5571 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.