Sequence Similarity Clusters for the Entities in PDB 1DN0

Entity #1 | Chains: A,C
IGM-KAPPA COLD AGGLUTININ (LIGHT CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 21780
95 % 26 85 251 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 1.9
PDBFlex
90 % 247 763 2
70 % 788 2426 1
50 % 1614 4913 1
40 % 1614 4913 1
30 % 1809 5780 1
Entity #2 | Chains: B,D
IGM-KAPPA COLD AGGLUTININ (HEAVY CHAIN) protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40307
95 % 1 2 18519 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 1 2 18128
70 % 1 9 4474
50 % 1615 4913 1
40 % 1615 4913 1
30 % 1810 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures