Sequence Similarity Clusters for the Entities in PDB 1DML

Entity #1 | Chains: A,C,E,G
DNA POLYMERASE PROCESSIVITY FACTOR protein, length: 319 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 19889
95 % 1 1 17643 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.3
PDBFlex
90 % 1 1 17289
70 % 1 1 16074
50 % 1 1 14068
40 % 1 1 12619
30 % 1 1 10873
Entity #2 | Chains: B,D,F,H
DNA POLYMERASE protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 25624
95 % 1 1 21813 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 1 21176
70 % 1 1 19428
50 % 1 1 16857
40 % 1 1 15025
30 % 1 1 12868

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures