Sequence Similarity Clusters for the Entities in PDB 1DML

Entity #1 | Chains: A,C,E,G
DNA POLYMERASE PROCESSIVITY FACTOR protein, length: 319 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18942
95 % 1 1 16891 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.4
PDBFlex
90 % 1 1 16553
70 % 1 1 15424
50 % 1 1 13521
40 % 1 1 12141
30 % 1 1 10464
Entity #2 | Chains: B,D,F,H
DNA POLYMERASE protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24477
95 % 1 1 20911 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 1 20328
70 % 1 1 18669
50 % 1 1 16227
40 % 1 1 14483
30 % 1 1 12406

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.