Sequence Similarity Clusters for the Entities in PDB 1DML

Entity #1 | Chains: A,C,E,G
DNA POLYMERASE PROCESSIVITY FACTOR protein, length: 319 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22481
95 % 1 1 20109 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.3
PDBFlex
90 % 1 1 19541
70 % 1 1 17964
50 % 1 1 15610
40 % 1 1 13862
30 % 1 1 11643
Entity #2 | Chains: B,D,F,H
DNA POLYMERASE protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22480
95 % 1 1 20108 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 1 19540
70 % 1 1 17963
50 % 1 1 15609
40 % 1 1 14997
30 % 1 1 11642

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures