Sequence Similarity Clusters for the Entities in PDB 1DML

Entity #1 | Chains: A,C,E,G
DNA POLYMERASE PROCESSIVITY FACTOR protein, length: 319 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 18613
95 % 1 1 16588 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.2
PDBFlex
90 % 1 1 16252
70 % 1 1 15135
50 % 1 1 13281
40 % 1 1 11929
30 % 1 1 10280
Entity #2 | Chains: B,D,F,H
DNA POLYMERASE protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24045
95 % 1 1 20510 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 1 19944
70 % 1 1 18369
50 % 1 1 15980
40 % 1 1 14269
30 % 1 1 12222

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.