Sequence Similarity Clusters for the Entities in PDB 1DML

Entity #1 | Chains: A,C,E,G
DNA POLYMERASE PROCESSIVITY FACTOR protein, length: 319 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 19405
95 % 1 1 17255 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.3
PDBFlex
90 % 1 1 16918
70 % 1 1 15752
50 % 1 1 13797
40 % 1 1 12381
30 % 1 1 10677
Entity #2 | Chains: B,D,F,H
DNA POLYMERASE protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 25035
95 % 1 1 21351 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 1 20742
70 % 1 1 19049
50 % 1 1 16549
40 % 1 1 14761
30 % 1 1 12650

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures