Sequence Similarity Clusters for the Entities in PDB 1DM4

Entity #1 | Chains: A
PROTEIN (ALPHA THROMBIN:LIGHT CHAIN) protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 269 335 45
95 % 270 336 61
90 % 270 336 66
70 % 271 338 78
50 % 271 338 106
40 % 271 338 129
30 % 271 338 136
Entity #2 | Chains: B
PROTEIN (MUTANT ALPHA THROMBIN:HEAVY CHAIN) protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 2495
95 % 301 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 304 381 39
70 % 315 405 46
50 % 315 405 84
40 % 1394 1698 4
30 % 1502 1848 6
Entity #3 | Chains: C
PROTEIN (FIBRINOPEPTIDE) protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.