Sequence Similarity Clusters for the Entities in PDB 1DM4

Entity #1 | Chains: A
PROTEIN (ALPHA THROMBIN:LIGHT CHAIN) protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 269 334 52
95 % 274 342 63 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 274 342 67
70 % 274 342 80
50 % 274 342 111
40 % 274 342 135
30 % 274 342 145
Entity #2 | Chains: B
PROTEIN (MUTANT ALPHA THROMBIN:HEAVY CHAIN) protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 36261
95 % 304 378 52 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 307 385 56
70 % 318 409 47
50 % 318 409 85
40 % 1530 1884 4
30 % 1539 1898 7
Entity #3 | Chains: C
PROTEIN (FIBRINOPEPTIDE) protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures