Sequence Similarity Clusters for the Entities in PDB 1DM4

Entity #1 | Chains: A
PROTEIN (ALPHA THROMBIN:LIGHT CHAIN) protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 268 333 44
95 % 269 334 60 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 269 334 64
70 % 270 336 77
50 % 270 336 100
40 % 270 336 123
30 % 270 336 134
Entity #2 | Chains: B
PROTEIN (MUTANT ALPHA THROMBIN:HEAVY CHAIN) protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 2358
95 % 300 372 36 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 303 379 38
70 % 314 403 45
50 % 314 403 77
40 % 1373 1669 4
30 % 1480 1811 6
Entity #3 | Chains: C
PROTEIN (FIBRINOPEPTIDE) protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.