Sequence Similarity Clusters for the Entities in PDB 1DM4

Entity #1 | Chains: A
PROTEIN (ALPHA THROMBIN:LIGHT CHAIN) protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 272 338 45
95 % 273 339 64
90 % 273 339 67
70 % 274 341 78
50 % 274 341 107
40 % 274 341 131
30 % 274 341 138
Entity #2 | Chains: B
PROTEIN (MUTANT ALPHA THROMBIN:HEAVY CHAIN) protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 11 2557
95 % 304 377 40 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 307 384 40
70 % 318 408 46
50 % 318 408 84
40 % 1414 1721 4
30 % 1522 1871 6
Entity #3 | Chains: C
PROTEIN (FIBRINOPEPTIDE) protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures