Sequence Similarity Clusters for the Entities in PDB 1DM4

Entity #1 | Chains: A
PROTEIN (ALPHA THROMBIN:LIGHT CHAIN) protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 263 328 43
95 % 264 329 58
90 % 264 329 63
70 % 265 331 72
50 % 265 331 96
40 % 265 331 120
30 % 265 331 133
Entity #2 | Chains: B
PROTEIN (MUTANT ALPHA THROMBIN:HEAVY CHAIN) protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 11 2260
95 % 295 367 34
90 % 298 374 36
70 % 309 398 40
50 % 309 398 74
40 % 1315 1606 4
30 % 1422 1748 6
Entity #3 | Chains: C
PROTEIN (FIBRINOPEPTIDE) protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.