Sequence Similarity Clusters for the Entities in PDB 1DM0

Entity #1 | Chains: A,L
SHIGA TOXIN A SUBUNIT protein, length: 287 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 19384
95 % 2 2 17198 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 2 2 16846
70 % 2 2 15674
50 % 5 6 7671
40 % 5 6 7065
30 % 5 6 6260
Entity #2 | Chains: B,C,D,E,F,G,H,I,J,K
SHIGA TOXIN B SUBUNIT protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 593
95 % 10 14 367 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 10 14 391
70 % 10 14 429
50 % 16 21 305
40 % 16 21 318
30 % 16 21 332

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.