Sequence Similarity Clusters for the Entities in PDB 1DM0

Entity #1 | Chains: A,L
SHIGA TOXIN A SUBUNIT protein, length: 287 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21409
95 % 2 2 19270 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 2 2 18751
70 % 2 2 17251
50 % 5 6 8293
40 % 5 6 7577
30 % 5 6 6575
Entity #2 | Chains: B,C,D,E,F,G,H,I,J,K
SHIGA TOXIN B SUBUNIT protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 10 505
95 % 10 14 427 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 10 14 466
70 % 10 14 497
50 % 16 22 333
40 % 16 22 365
30 % 16 22 369

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures