Sequence Similarity Clusters for the Entities in PDB 1DLK

Entity #1 | Chains: A,C
Thrombin light chain protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,D
Thrombin heavy chain protein, length: 230 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 26 808
95 % 17 26 1105 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.7
PDBFlex
90 % 17 26 1124
70 % 17 26 1168
50 % 17 26 1208
40 % 1266 1696 4
30 % 1362 1846 6
Entity #3 | Chains: E,F
peptidic inhibitor protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.