Sequence Similarity Clusters for the Entities in PDB 1DLH

Entity #1 | Chains: A,D
CLASS II HISTOCOMPATIBILITY ANTIGEN (HLA-DR1) (ALPHA CHAIN) protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 82 243
95 % 66 89 284 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 74 105 236
70 % 74 105 267
50 % 108 161 184
40 % 108 161 196
30 % 221 334 101
Entity #2 | Chains: B,E
CLASS II HISTOCOMPATIBILITY ANTIGEN (HLA-DR1) (BETA CHAIN) protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 38 677
95 % 33 41 762 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 64 84 329
70 % 108 159 156
50 % 108 161 185
40 % 108 161 197
30 % 222 334 101
Entity #3 | Chains: C,F
ENTEROTOXIN TYPE B PRECURSOR protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures