Sequence Similarity Clusters for the Entities in PDB 1DLH

Entity #1 | Chains: A,D
CLASS II HISTOCOMPATIBILITY ANTIGEN (HLA-DR1) (ALPHA CHAIN) protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 74 231
95 % 59 81 295 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 67 97 236
70 % 67 97 269
50 % 97 149 179
40 % 97 149 196
30 % 199 310 99
Entity #2 | Chains: B,E
CLASS II HISTOCOMPATIBILITY ANTIGEN (HLA-DR1) (BETA CHAIN) protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 38 568
95 % 33 41 720 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 57 76 339
70 % 93 140 163
50 % 97 149 178
40 % 97 149 195
30 % 200 310 99
Entity #3 | Chains: C,F
ENTEROTOXIN TYPE B PRECURSOR protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.