Sequence Similarity Clusters for the Entities in PDB 1DLH

Entity #1 | Chains: A,D
CLASS II HISTOCOMPATIBILITY ANTIGEN (HLA-DR1) (ALPHA CHAIN) protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 63 87 232
95 % 73 98 268 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 73 98 287
70 % 82 115 259
50 % 120 177 170
40 % 120 177 185
30 % 120 177 193
Entity #2 | Chains: B,E
CLASS II HISTOCOMPATIBILITY ANTIGEN (HLA-DR1) (BETA CHAIN) protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 32 40 598
95 % 34 43 749 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.0
PDBFlex
90 % 72 94 307
70 % 81 110 285
50 % 109 156 193
40 % 109 156 209
30 % 109 156 217
Entity #3 | Chains: C,F
ENTEROTOXIN TYPE B PRECURSOR protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures