Sequence Similarity Clusters for the Entities in PDB 1DLH

Entity #1 | Chains: A,D
CLASS II HISTOCOMPATIBILITY ANTIGEN (HLA-DR1) (ALPHA CHAIN) protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 50 71 232
95 % 56 78 296 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 64 94 235
70 % 64 94 270
50 % 94 146 176
40 % 94 146 193
30 % 193 304 99
Entity #2 | Chains: B,E
CLASS II HISTOCOMPATIBILITY ANTIGEN (HLA-DR1) (BETA CHAIN) protein, length: 188 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 38 560
95 % 33 41 699 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 54 73 344
70 % 90 137 164
50 % 94 146 175
40 % 94 146 192
30 % 194 304 99
Entity #3 | Chains: C,F
ENTEROTOXIN TYPE B PRECURSOR protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.