Sequence Similarity Clusters for the Entities in PDB 1DKX

Entity #1 | Chains: A
SUBSTRATE BINDING DOMAIN OF DNAK protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58029
95 % 24 35 698 Flexibility: Low
Max RMSD: 5.5, Avg RMSD: 2.0
PDBFlex
90 % 24 35 729
70 % 24 35 780
50 % 24 35 830
40 % 26 39 782
30 % 26 39 771
Entity #2 | Chains: B
SUBSTRATE PEPTIDE (7 RESIDUES) protein, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.