Sequence Similarity Clusters for the Entities in PDB 1DKG

Entity #1 | Chains: A,B
NUCLEOTIDE EXCHANGE FACTOR GRPE protein, length: 197 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41830
95 % 1 1 31749 Flexibility: Medium
Max RMSD: 5.4, Avg RMSD: 5.4
PDBFlex
90 % 1 1 30373
70 % 1 1 27141
50 % 1 1 23148
40 % 1 1 20373
30 % 1 1 17260
Entity #2 | Chains: D
MOLECULAR CHAPERONE DNAK protein, length: 383 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53654
95 % 1 1 38986
90 % 1 1 37255
70 % 1 1 33120
50 % 116 116 280
40 % 116 116 300
30 % 117 117 300

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.