Sequence Similarity Clusters for the Entities in PDB 1DKG

Entity #1 | Chains: A,B
NUCLEOTIDE EXCHANGE FACTOR GRPE protein, length: 197 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43262
95 % 1 1 32768 Flexibility: Medium
Max RMSD: 5.4, Avg RMSD: 5.4
PDBFlex
90 % 1 1 31305
70 % 1 1 27922
50 % 1 1 23783
40 % 1 1 20924
30 % 1 1 17720
Entity #2 | Chains: D
MOLECULAR CHAPERONE DNAK protein, length: 383 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55389
95 % 1 1 40194
90 % 1 1 38361
70 % 1 1 34050
50 % 119 119 284
40 % 119 119 301
30 % 120 120 302

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures