Sequence Similarity Clusters for the Entities in PDB 1DKG

Entity #1 | Chains: A,B
NUCLEOTIDE EXCHANGE FACTOR GRPE protein, length: 197 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42741
95 % 1 1 32389 Flexibility: Medium
Max RMSD: 5.4, Avg RMSD: 5.4
PDBFlex
90 % 1 1 30957
70 % 1 1 27625
50 % 1 1 23543
40 % 1 1 20716
30 % 1 1 17539
Entity #2 | Chains: D
MOLECULAR CHAPERONE DNAK protein, length: 383 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54758
95 % 1 1 39740
90 % 1 1 37942
70 % 1 1 33694
50 % 119 119 280
40 % 119 119 297
30 % 120 120 302

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures