Sequence Similarity Clusters for the Entities in PDB 1DKF

Entity #1 | Chains: A
PROTEIN (RETINOID X RECEPTOR-ALPHA) protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67288
95 % 43 67 349 Flexibility: Medium
Max RMSD: 13.2, Avg RMSD: 4.4
PDBFlex
90 % 44 69 362
70 % 45 85 309
50 % 45 85 372
40 % 49 98 315
30 % 908 1300 8
Entity #2 | Chains: B
PROTEIN (RETINOIC ACID RECEPTOR-ALPHA) protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 10321
95 % 4 6 10136 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.5
PDBFlex
90 % 4 6 9997
70 % 19 23 2198
50 % 19 24 1892
40 % 19 24 1875
30 % 909 1300 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures