Sequence Similarity Clusters for the Entities in PDB 1DKF

Entity #1 | Chains: A
PROTEIN (RETINOID X RECEPTOR-ALPHA) protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57934
95 % 38 57 373 Flexibility: Medium
Max RMSD: 13.2, Avg RMSD: 4.3
PDBFlex
90 % 39 58 396
70 % 40 75 302
50 % 40 75 357
40 % 44 88 302
30 % 697 979 9
Entity #2 | Chains: B
PROTEIN (RETINOIC ACID RECEPTOR-ALPHA) protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 8545
95 % 4 6 8833 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.5
PDBFlex
90 % 4 6 8759
70 % 18 21 2076
50 % 18 21 2065
40 % 18 21 2062
30 % 698 979 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.