Sequence Similarity Clusters for the Entities in PDB 1DKF

Entity #1 | Chains: A
PROTEIN (RETINOID X RECEPTOR-ALPHA) protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66030
95 % 42 64 352 Flexibility: Medium
Max RMSD: 13.2, Avg RMSD: 4.4
PDBFlex
90 % 43 66 364
70 % 44 82 309
50 % 44 82 371
40 % 48 95 318
30 % 893 1272 7
Entity #2 | Chains: B
PROTEIN (RETINOIC ACID RECEPTOR-ALPHA) protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 10077
95 % 4 6 9882 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.5
PDBFlex
90 % 4 6 9760
70 % 19 23 2139
50 % 19 24 1838
40 % 19 24 1822
30 % 894 1272 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures