Sequence Similarity Clusters for the Entities in PDB 1DKF

Entity #1 | Chains: A
PROTEIN (RETINOID X RECEPTOR-ALPHA) protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58773
95 % 38 57 378
90 % 39 58 399
70 % 40 75 310
50 % 40 75 371
40 % 44 88 306
30 % 699 983 10
Entity #2 | Chains: B
PROTEIN (RETINOIC ACID RECEPTOR-ALPHA) protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 8649
95 % 4 6 8957 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.4
PDBFlex
90 % 4 6 8880
70 % 19 22 2010
50 % 19 22 2015
40 % 19 22 2019
30 % 700 983 10

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.