Sequence Similarity Clusters for the Entities in PDB 1DKE

Entity #1 | Chains: A,C
HEMOGLOBIN: ALPHA CHAIN protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 121 214 22
95 % 141 245 19
90 % 142 246 21
70 % 171 327 15
50 % 408 744 4
40 % 413 749 8
30 % 826 1198 8
Entity #2 | Chains: B,D
HEMOGLOBIN: BETA CHAIN protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 90 164 50
95 % 149 245 18 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 152 250 19
70 % 186 341 12
50 % 409 744 4
40 % 414 749 8
30 % 827 1198 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.