Sequence Similarity Clusters for the Entities in PDB 1DKE

Entity #1 | Chains: A,C
HEMOGLOBIN: ALPHA CHAIN protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 125 222 22
95 % 145 250 19
90 % 146 251 20
70 % 174 332 14
50 % 414 754 4
40 % 419 759 8
30 % 837 1214 8
Entity #2 | Chains: B,D
HEMOGLOBIN: BETA CHAIN protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 94 169 50
95 % 153 250 18 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 156 255 19
70 % 189 346 11
50 % 415 754 4
40 % 420 759 8
30 % 838 1214 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures