Sequence Similarity Clusters for the Entities in PDB 1DKE

Entity #1 | Chains: A,C
HEMOGLOBIN: ALPHA CHAIN protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 147 254 12
95 % 154 265 16
90 % 154 265 17
70 % 174 332 17
50 % 414 754 4
40 % 419 759 7
30 % 867 1294 6
Entity #2 | Chains: B,D
HEMOGLOBIN: BETA CHAIN protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 129 214 43
95 % 153 250 20 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 156 255 21
70 % 189 346 14
50 % 415 754 4
40 % 420 759 7
30 % 868 1294 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures