Sequence Similarity Clusters for the Entities in PDB 1DKD

Entity #1 | Chains: A,B,C,D
GROEL protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 11362
95 % 2 3 10979 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 2 3 10819
70 % 2 3 10228
50 % 3 4 7790
40 % 3 4 7096
30 % 3 4 6232
Entity #2 | Chains: E,F,G,H
12-MER PEPTIDE protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures