Sequence Similarity Clusters for the Entities in PDB 1DK1

Entity #1 | Chains: B
RRNA FRAGMENT rna, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
30S RIBOSOMAL PROTEIN S15 protein, length: 86 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 45060
95 % 32 303 36 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 32 303 40
70 % 32 303 52
50 % 41 470 26
40 % 41 475 37
30 % 41 475 55

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures